We have focused on stability of the peptide-MHC complex as a determining factor of ligand potency for thymocytes and peripheral CD4 ؉ T cell responses. MHC variant peptides that have low affinities and fast dissociation rates are different in that they stimulate proliferation and cytolysis of mature T cells (classifying the variant peptides as weak agonists) but do not induce thymocyte negative selection. The MHC variant weak agonists require significant receptor reserve, because decreasing the level of T cell receptor on mature T cells blocks the proliferative response. These results demonstrate that peripheral T cells are more sensitive to MHC variant ligands by virtue of increased T cell receptor expression; in addition, the data support a T cell model of the spare receptor theory.T he pivotal interaction between T cell receptor (TCR)-peptide-MHC ternary complexes mediates the development and activation of T cells. Mature T cells respond to antigenic peptides that can induce variable responses. Altered peptide ligands (APLs) are analog peptides with substitutions at TCR contact residues that have no change in affinity for the MHC molecule, and can be classified according to their ability to activate T cells, from agonist to partial agonist to antagonist to null (1-3). Investigation of the interactions of APLs with TCR has correlated dissociation, a kinetic parameter of peptide-MHC interaction, with the resulting T cell response (4-8). TCRs that dissociate very quickly from peptide-MHC ligands may result in no response, whereas ligands that bind for an extended duration lead to activation of the T cell. These data support the kinetic discrimination or kinetic proofreading models that suggest that the half-life of the interaction between peptide-MHC and TCR may determine the agonist or antagonist properties of a ligand (9, 10). A recent article expanded this model to state that any TCR half-life above or below an optimal dwell time, or length of TCR-peptide-MHC interaction, results in poor activation of the T cell (11). Because of the focus on classic APL with amino acid changes at TCR contacts, none of these models specifically address the effect of variation in the kinetics of peptide-MHC interactions on the potency of ligand and the resulting T cell response.Thymocytes, like peripheral T cells, are exquisitely sensitive to subtle changes in the peptide sequence. Early experiments with fetal thymic organ culture as a model for selection indicated that antagonists, weak agonists, and partial agonists induce positive selection of CD8 thymocytes (12-14), whereas CD4 T cell antagonists induce negative selection (15,16). Together, these data imply that thymocytes are more sensitive in that they respond by positive͞negative selection to APLs that fail to activate peripheral T cells. This increased sensitivity is consistent with the requirement of thymocytes to interact with self-peptide MHC complexes during selection to generate a T cell repertoire that responds to foreign antigen yet is tolerant to self (17-19).Th...