Signals issued by dorsal roof and ventral floor plates, respectively, underlie the major patterning process of dorsalization and ventralization during vertebrate neural tube development. The ventrally produced morphogen Sonic hedgehog (SHH) is crucial for vertebrate hindbrain and spinal motor neuron development. One diagnostic gene for motor neurons is the LIM/homeodomain gene
islet1
, which has additional ventral expression domains extending into mid- and forebrain. In order to corroborate motor neuron development and, in particular, to improve on the identification of poorly documented zebrafish forebrain
islet1
populations, we studied adult brains of transgenic
islet1
-GFP zebrafish (3 and 6 months). This molecular neuroanatomical analysis was supported by immunostaining these brains for tyrosine hydroxylase (TH) or choline acetyltransferase (ChAT), respectively, revealing zebrafish catecholaminergic and cholinergic neurons. The present analysis of ChAT and
islet1
-GFP label confirms ongoing adult expression of
islet1
in zebrafish (basal plate) midbrain, hindbrain, and spinal motor neurons. In contrast, non-motor cholinergic systems lack
islet1
expression. Additional presumed basal plate
islet1
positive systems are described in detail, aided by TH staining which is particularly informative in the diencephalon. Finally, alar plate zebrafish forebrain systems with
islet1
expression are described (i.e., thalamus, preoptic region, and subpallium). We conclude that adult zebrafish continue to express
islet1
in the same brain systems as in the larva. Further, pending functional confirmation we hypothesize that the larval expression of
sonic hedgehog
(
shh
) might causally underlie much of adult
islet1
expression because it explains findings beyond ventrally located systems, for example regarding
shh
expression in the zona limitans intrathalamica and correlated
islet1
-GFP expression in the thalamus.