In this study, a detailed comparison between two power factor correction (PFC) controls, viz., average current mode (ACM) control and enhanced non-linear carrier (ENLC) control for single-ended primary inductance converter (SEPIC) are made. In ACM control, a linear current reference, generated using the conventional method is compared with the inductor current. In ENLC control, a non-linear carrier current reference, generated using passive components is compared with switch current. The proposed ENLC control uses reduced components and sensors compared to ACM and conventional non-linear carrier control methods. The evolving of nonlinear phenomena during load variation is investigated along with the electromagnetic interference (EMI) study with power spectral density estimation. For stability enhancement and EMI mitigation, a detailed simulation study is performed using MATLAB/Simulink platform. Mathematical bifurcation analysis, by deriving critical phase angle is carried out to obtain a better insight of stability boundaries in order to access the system behaviour. Owing to the advantages of ENLC, an experimental setup of ENLC controlled SEPIC PFC converter was built to support the results.