Comprehensive Survey of ChIP-Seq Datasets to Identify Candidate Iron Homeostasis Genes Regulated by Chromatin Modifications

Ye, Yu; Wang, Y; Yao, Zhu‐Jun; Wang, Ziqin; Xia, Zhang; Lee, Joohyun

doi:10.1007/978-1-0716-3183-6_9

Cited by 1 publication

(1 citation statement)

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“…However, ChIP assay and the deriving data are still the primary method to investigate protein–chromatin interactions, at least in model species, also in reference to stress-related contexts. For example, in a very recent study, publicly available ChIP-seq datasets of Arabidopsis wild-type and mutants defective in key enzymes of histone modification and chromatin remodelling were used to produce a comprehensive list of iron homeostasis genes with differential enrichment of various histone modifications [ 40 ]. Furthermore, novel procedures are being developed to overcome some of the limitations, such as the relatively high amount of plant material needed for chromatin extraction and immunoprecipitation [ 41 ].…”

Section: Plant Epigenetic Mechanisms: How Do They Work and How Can We...mentioning

confidence: 99%

Epigenetic Control of Plant Response to Heavy Metals

Fasani,

Giannelli,

Varotto

et al. 2023

Plants

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Plants are sessile organisms that must adapt to environmental conditions, such as soil characteristics, by adjusting their development during their entire life cycle. In case of low-distance seed dispersal, the new generations are challenged with the same abiotic stress encountered by the parents. Epigenetic modification is an effective option that allows plants to face an environmental constraint and to share the same adaptative strategy with their progeny through transgenerational inheritance. This is the topic of the presented review that reports the scientific progress, up to date, gained in unravelling the epigenetic response of plants to soil contamination by heavy metals and metalloids, collectively known as potentially toxic elements. The effect of the microbial community inhabiting the rhizosphere is also considered, as the evidence of a transgenerational transfer of the epigenetic status that contributes to the activation in plants of response mechanisms to soil pollution.

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Section: Plant Epigenetic Mechanisms: How Do They Work and How Can We...mentioning

confidence: 99%