Cohnella cellulosilytica sp. nov., isolated from buffalo faeces

Khianngam, Saowapar; Tanasupawat, Somboon; Akaracharanya, Ancharida; Kim, Kwang Kyu; Lee, Keun Chul; Lee, Jung-Sook

doi:10.1099/ijs.0.032607-0

Cited by 39 publications

(22 citation statements)

References 23 publications

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“…Major fatty acids are iso-C 16 : 0 , anteiso-C 15 : 0 and C 16 : 0 and the predominant polar lipids are diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine (Kämpfer et al, 2006). At present, the genus contains 21 species with validly published names, Cohnella hongkongensis and C. thermotolerans (Kämpfer et al, 2006), C. laeviribosi (Cho et al, 2007), C. phaseoli (García-Fraile et al, 2008), C. damuensis (Luo et al, 2010), C. fontinalis (Shiratori et al, 2010), C. ginsengisoli and C. yongneupensis (Kim et al, 2010), C. luojiensis (Cai et al, 2010), C. thailandensis (Khianngam et al, 2010a), C. terrae and C. xylanilytica (Khianngam et al, 2010b), C. panacarvi (Yoon et al, 2007), C. cellulosilytica (Khianngam et al, 2012), C. soli and C. suwonensis (Kim et al, 2012), C. boryungensis (Yoon & Jung, 2012), C. arctica (Jiang et al, 2012), C. formosensis (Hameed et al, 2013), C. lupini (Flores-Félix et al, 2014) and C. ferri (Mayilraj et al, 2011), as well as 'Cohnella plantaginis' , the name of which has not yet been validly published. Most of the type strains were isolated from different soils (Yoon et al, 2007;Cai et al, 2010;Kim et al, 2010;Kim et al, 2012;Jiang et al, 2012;Yoon & Jung 2012;Khianngam et al, 2010a, b); some were isolated from the rhizosphere (Hameed et al, 2013) or endophytic compartments, root nodules, of plants (FloresFélix et al, 2014;García-Fraile et al, 2008).…”

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confidence: 99%

Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays

Kämpfer

Glaeser

McInroy

et al. 2014

International Journal of Systematic and Evolutionary Microbiology

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A Gram-staining-positive, aerobic, non-endospore forming organism, isolated as a seed endophyte (colonizing the internal healthy tissue of plant seed) of sweet corn (Zea mays), strain CSE-5610 T , was studied for its taxonomic allocation. On the basis of 16S rRNA gene sequence comparisons, strain CSE-5610 T was grouped into the genus Cohnella, most closely related toCohnella ginsengisoli GR21-5 T (98.1 %) and 'Cohnella plantaginis' YN-83 (97.5 %). The 16SrRNA gene sequence similarity to other members of the genus Cohnella was ,96.6 %. DNA-DNA hybridization of strain CSE-5610 T with C. ginsengisoli DSM 18997 T and 'C. plantaginis' DSM 25424 was 58 % (reciprocal 24 %) and 30 % (reciprocal 27 %), respectively. The fatty acid profile from whole cell hydrolysates supported the allocation of the strain to the genus Cohnella; iso-and anteiso-branched fatty acids were found as major compounds. meso-Diaminopimelic acid was identified as the cell-wall diamino acid. The quinone system consisted predominantly of menaquinone MK-7. The polar lipid profile was composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two aminophospholipids, a phospholipid and minor amounts of two polar lipids. In the polyamine pattern, spermidine was the major polyamine. The G+C content of the genomic DNA was 60 mol%. In addition, the results of physiological and biochemical tests also allowed phenotypic differentiation of strain CSE-5610 T from the two closely related strains. Hence, CSE-5610 T represents a novel species of the genus Cohnella, for which we propose the name Cohnella rhizosphaerae sp. nov., with CSE-5610 T (5LMG 28080 T 5CIP 110695 T ) as the type strain.

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confidence: 99%

Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays

Kämpfer

Glaeser

McInroy

et al. 2014

International Journal of Systematic and Evolutionary Microbiology

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“…T from root nodules of Phaseolus cocceneus, Spain (García-Fraile et al, 2008); Cohnella damuensis [13][14][15][16][17][18][19][20][21][22][23][24][25] T from a soil sample, Tibet (Luo et al, 2010); Cohnella cellulosilytica T from buffalo faeces (Khianngam et al, 2012); Cohnella thailandensis S1-3 T (KCTC 22296 T ), Cohnella terrae MX21-2 T and Cohnella xylanilytica MX15-2…”

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confidence: 99%

Cohnella formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L

Hameed

Hung

Lin

et al. 2013

International Journal of Systematic and Evolutionary Microbiology

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A Gram-positive, spore-forming, aerobic, rod-shaped, xylanolytic bacterium designated strain CC- T was isolated from the rhizosphere of Medicago sativa L. in Taiwan T and Cohnella thailandensis KCTC 22296 T was 37.7 %±1.7 % (reciprocal value, 55.7 %±3.0 %). Predominant cellular fatty acids were iso-C 16 : 0 and anteiso-C 15 : 0 . The polar lipid profile constituted diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, lysyl-phosphatidylglycerol, three unidentified phospholipids and three unidentified aminophospholipids. The major respiratory quinone was MK-7 and the DNA G+C content was 58.3 mol%. Strain CC-Alfalfa-35 T contained meso-diaminopimelic acid as the major diamino acid in the cell-wall peptidoglycan.

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“…Strain FAB2 T contained meso -diaminopimelic acid. This diamino acid has been commonly detected in some closely related species of the genera Cohnella (Khianngam et al , 2010a, 2010b, 2012; Hameed et al , 2013; Flores-Félix et al , 2014; Kämpfer et al , 2014; Huang et al , 2014) and Saccharibacillus (Yang et al , 2009). Genomic DNA was prepared using the same method used for PCR amplification of the 16S rRNA gene.…”

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confidence: 95%

Ammoniibacillus agariperforans gen. nov., sp. nov., a thermophilic, agar-degrading bacterium isolated from compost

Sakai

Deguchi

Hosoda

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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Ammoniibacillus agariperforans gen. nov., sp. nov., a thermophilic, agar-degrading bacterium isolated from compost T was different enough at the genus level from closely related species. The percentages of 16S rRNA gene sequence similarity with related organisms were 90.4 % for Thermobacillus xylanilyticus, 91.8 % for Paenibacillus barengoltzii, 89.4 % for Cohnella lupini, 90.1 % for Fontibacillus aquaticus, and 89.0 % for Saccharibacillus sacchari. Morphological and physiological analyses revealed that the strain was motile, rod-shaped, Gram-stain-positive, aerobic and able to form oval endospores in swollen sporangia. Ammonium was required as a nitrogen source while nitrate, nitrite, urea and glutamate were not utilized. Catalase and oxidase activities were weakly positive and positive, respectively. The bacterium grew in the temperature range of 50-65 6C and in media with pH 7.5 to 9.0. Optimal growth occurred at 60 6C and pH 8.0-8.6. Growth was inhibited at pH¡7.0 and NaCl concentrations ¢2.5 % (w/v). In chemotaxonomic characterization, MK-7 was identified as the dominant menaquinone. Major fatty acids were iso-C 16 : 0 and C 16 : 0 . Dominant polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phosphatidylcholine was present in a moderate amount. The diamino acid in the cell wall was meso-diaminopimelic acid. The G+C content of the genomic DNA was 49.5 mol% in a nucleic acid study. On the basis of genetic and phenotypic characteristics, strain FAB2showed characteristics suitable for classification as the type strain of a novel species of a new genus in the family Paenibacillaceae, for which the name Ammoniibacillus agariperforans gen. nov., sp. nov. is proposed.

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Cohnella cellulosilytica sp. nov., isolated from buffalo faeces

Cited by 39 publications

References 23 publications

Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays

Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays

Cohnella formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L

Ammoniibacillus agariperforans gen. nov., sp. nov., a thermophilic, agar-degrading bacterium isolated from compost

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