“…Five genes were more strongly transcribed in VAR* than in TT01␣: mipA, which encodes a protein involved in peptidoglycan synthesis and controlling the growth of the stress-bearing sacculus of Escherichia coli (62); pbgP1, the first gene of an operon encoding the components of an enzymatic pathway involved in arabinose incorporation in the lipid A moiety of lipopolysaccharide and responsible for polymyxin resistance in Salmonella enterica (23,34,35); cat, which encodes a chloramphenicol acetyltransferase (13); ccm, which encodes an internal protein, CcmA, influencing cell shape in Proteus mirabilis (37); and uspG, which encodes a universal stress protein that may, in some cases, be linked to resistance to DNA-damaging agents and to respiratory uncouplers (45). Eight genes were found to be less strongly transcribed in VAR* than in TT01␣: plu1369, which encodes a putative -lactamase (15); ompN, encoding a protein of the porin family responsible for the permeability of Gram-negative bacteria to small, polar molecules (55); sodA and katE (plu3068), which encode the manganese-dependent superoxide dismutase SodA and the catalase KatE, respectively, both of which are involved in the detoxification of reactive oxygen species in Escherichia coli (48); and the hcaE, hcaF, hcaB, and hcaD genes, which belong to an operon encoding the components of a pathway involved in the degradation of 3-phenylpropionate and cinnamic acid and participate in oxidative stress resistance in Photorhabdus (16,17).…”