Chloroplast genome sequence of<i>Solanum demissum</i>, a wild tuber-bearing species was completed

Cho, Kwang-Soo; Cho, Ji-Hong; Park, Young-Eun; Park, Tae-Ho

doi:10.1080/23802359.2019.1612716

Cited by 5 publications

(2 citation statements)

References 15 publications

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“… 2018 ), MK690623 (Park 2022c ), MK036508 (Cho et al. 2019 ), MZ233587 (this study), DQ386163 (Gargano et al. 2012 ), KY419708 (Park 2017 ), MK036507 (Park 2019 ), NC028069 (Cho et al.…”

Section: Resultsmentioning

confidence: 56%

Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives

Park

2023

Mitochondrial DNA Part B

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Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 37.86%. It comprises a large single copy (LSC) region of 86,057 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,593 bp. Additionally, 158 functional genes in the genome are identified, including 105 protein-coding genes, 8 ribosomal RNAs, and 45 transfer RNAs. Phylogenetic analysis revealed that S. iopetalum is grouped into a large clade with other Solanum species, including cultivated potatoes ( S. tuberosum ) and is closely related to Mexican Solanum species ( S. stoloniferum , S. verrucosum , S. hougasii , S. hjertingii , and S. demissum ). This study provides useful genomic information for future breeding and evolutionary studies of S. iopetalum and other Solanum species.

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“… 2018 ), MK690623 (Park 2022c ), MK036508 (Cho et al. 2019 ), MZ233587 (this study), DQ386163 (Gargano et al. 2012 ), KY419708 (Park 2017 ), MK036507 (Park 2019 ), NC028069 (Cho et al.…”

Section: Resultsmentioning

confidence: 56%

Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives

Park

2023

Mitochondrial DNA Part B

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“…필요에 따라 확인한 PCR 결과물을 대상으 로 제한효소를 처리하였다. (Cho et al , 2019Daniell et al 2006;Gargano et al 2005;Kim et al 2018;Kim and Park 2019, 2020a, 2020bPark 2021aPark , 2021bPark , 2022aPark , 2022b (Table 1). (Chen et al 2013;Lössl et al 2000;Mohapatra et al 1998;Smyda-Dajmund et al 2016;Wang et al 2011;Xiang et al 2004)…”

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Completion of chloroplast genome sequence and development of PCR-based markers for Solanum pinnatisectum

Son,

Park

2024

J Plant Biotechnol

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PCR-based markers for discriminatingSolanum demissumwere developed by comparison of complete chloroplast genome sequences ofSolanumspecies

Park

2021

J Plant Biotechnol

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Solanum demissum is one of the wild Solanum species originating from Mexico. It has wildly been used for potato breeding due to its resistance to Phytophthora infestans. S. demissum has an EBN value of four, which is same as that of S. tuberosum, so that it is directly crossable for breeding purposes with the cultivated tetraploid potato (S. tuberosum). In this study, the chloroplast genome sequence of S. demissum obtained by next-generation sequencing technology was described and compared with those of seven other Solanum species to develop S. demissum-specific markers. Thetotal sequence length of the chloroplast genome is 155,558 bp, and its structural organization is similar to those of other Solanum species. Phylogenetic analysis with ten other Solanaceae species revealed that S. demissum is most closely grouped with S. hougasii and S. stoloniferum followed by S. berthaultii and S. tuberosum. Additional comparison of the chloroplast genome sequence with those of seven other Solanum species revealed two InDels specific to S. demissum. Based on these InDels, two PCR-based markers for discriminating S. demissum from other Solanum species were developed. The results obtained in this study will provide an opportunity to investigate more detailed evolutionary and breeding aspects in Solanum species.

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Chloroplast genome sequence ofSolanum demissum, a wild tuber-bearing species was completed

Cited by 5 publications

References 15 publications

Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives

Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives

Completion of chloroplast genome sequence and development of PCR-based markers for Solanum pinnatisectum

PCR-based markers for discriminatingSolanum demissumwere developed by comparison of complete chloroplast genome sequences ofSolanumspecies

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