Characterization of the complete mitochondrial genome of Biston marginata (Lepidoptera: Geometridae) and phylogenetic analysis among lepidopteran insects

Nan, Zheng; Sun, Yuxuan; Yang, Liangli; Wu, Liang; Abbas, Muhammad Nadeem; Chen, Chen; Gao, Jin; Li, Xiaokun; Liu, Chao-Liang; Dai, Li-Shang

doi:10.1016/j.ijbiomac.2018.02.110

Cited by 20 publications

(13 citation statements)

References 35 publications

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“…Of these Bombycoidea and Geometroidea were sister groups, and the relationgship of them were closer than Noctuoidea in ML analysis (Fig 7). In the present study, the relationships at superfamily level are consistent with prior studies of lepidopteran phylogeny [88][89][90]. Previous classifications of Pyralidae species were mostly based…”

Section: Phylogenetic Analysissupporting

confidence: 91%

Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects

et al. 2020

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Orthaga olivacea Warre (Lepidoptera: Pyralidae) is an important agricultural pest of camphor trees (Cinnamomum camphora). To further supplement the known genome-level features of related species, the complete mitochondrial genome of Orthaga olivacea is amplified, sequenced, annotated, analyzed, and compared with 58 other species of Lepidopteran. The complete sequence is 15,174 bp, containing 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a putative control region. Base composition is biased toward adenine and thymine (79.02% A+T) and A+T skew are slightly negative. Twelve of the 13 PCGs use typical ATN start codons. The exception is cytochrome oxidase 1 (cox1) that utilizes a CGA initiation codon. Nine PCGs have standard termination codon (TAA); others have incomplete stop codons, a single T or TA nucleotide. All the tRNA genes have the typical cloverleaf secondary structure, except for trnS (AGN) , in which dihydrouridine (DHU) arm fails to form a stable stem-loop structure. The A+T-rich region (293 bp) contains a typical Lepidopter motifs 'ATAGA' followed by a 17 bp poly-T stretch, and a microsatellite-like (AT) 13 repeat. Codon usage analysis revealed that Asn, Ile, Leu2, Lys, Tyr and Phe were the most frequently used amino acids, while Cys was the least utilized. Phylogenetic analysis suggested that among sequenced lepidopteran mitochondrial genomes, Orthaga olivacea Warre was most closely related to Hypsopygia regina, and confirmed that Orthaga olivacea Warre belongs to the Pyralidae family.

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Section: Phylogenetic Analysissupporting

confidence: 91%

Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects

et al. 2020

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“…The nearly complete mitogenome of E. ankeraria is 15,250 bp (GenBank accession number: MN046105). It encoded 13 PCGs, 22 tRNA genes, two rRNA genes and were similar with related reports before (Hong et al 2009;Hao et al 2012;Chen et al 2016;Zheng et al 2018). All genes have the similar locations and strands with that of other published Geometridae species.…”

Section: Introductionsupporting

confidence: 88%

The mitochondrial genome of Erannis ankeraria (Lepidoptera: Geometridae)

Chen

Wang

et al. 2019

Mitochondrial DNA Part B

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The measuring worm Erannis ankeraria belongs to the subfamily Ennominae of Geometridae. The mitogenome (GenBank accession number: MN046105) of E. ankeraria was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,250 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Geometridae. The nucleotide composition biases towards A and T, which together made up 79.3% of the entirety. Bayesian inference analysis strongly supported the monophyly of Bombycoidea, Geometroidea, Noctuoidea, Papilionoidea, Pyraloidea, and Tortricoidea were strongly supported. This result also suggested that the Geometroidea was the sister to Bombycoidea, and then Noctuoidea was assigned to the sister group to the clade of Geometroidea þ Bombycoidea, and then Pyraloidea was the sister group to the clade that contains Geometroidea, Bombycoidea, and Noctuoidea, and then Papilionoidea was the sister group to the clade that contains these four superfamilies mentioned above.

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“…MH433621) is 15,312 bp in length, consisting of 13 protein-coding genes, 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region. Twenty-three genes (trnI, trnM, nad2, trnW, cox1, trnL2, cox2, trnK, trnD, atp8, atp6, cox3, trnG, nad3, trnA, trnR, trnN, trnS1, trnE, trnT, nad6, cytB, and trnS2) were found to be encoded by the majority strand (J-strand) and the other 14 genes (trnQ, trnC, trnY, trnF, nad5, trnH, nad4, nad4L, trnP, nad1, trnL1, rrnL, trnV, and rrnS) by minority strand (N-strand), those similar to Biston marginata (Zheng et al 2018). Overall nucleotide compositions are 39.60% of A, 11.80% of C, 40.90% of T, and 7.70% of G, with an AT content of 80.50%.…”

mentioning

confidence: 99%

Complete mitochondrial genome of Sitotroga cerealella (Insecta: Lepidoptera: Gelechiidae)

Yuan

Yang

Dai

2018

Mitochondrial DNA Part B

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In this study, we have sequenced the complete mitochondrial genome of Sitotroga cerealella, which is 15,312 bp and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, and a control region. Twenty-three genes were found to be encoded by the majority strand and the other 14 genes by minority strand, it is similar to Lepidoptera insects. The nucleotide compositions 39.60% of A, 11.80% of C, 40.90% of T, and 7.70% of G.

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Characterization of the complete mitochondrial genome of Biston marginata (Lepidoptera: Geometridae) and phylogenetic analysis among lepidopteran insects

Cited by 20 publications

References 35 publications

Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects

Characterization of the complete mitochondrial genome of Orthaga olivacea Warre (Lepidoptera Pyralidae) and comparison with other Lepidopteran insects

The mitochondrial genome of Erannis ankeraria (Lepidoptera: Geometridae)

Complete mitochondrial genome of Sitotroga cerealella (Insecta: Lepidoptera: Gelechiidae)

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