“…Modeling the dynamics of the 2245 features across the two treatments and three time points allowed features to be grouped into six distinct expression profiles (profiles I to VI), of which the largest group, termed profile I, corresponded to 720 features that showed a strong increase in accumulation at 2 DAI with a reduction at the 4 and 6 DAI time points ( Figure 5B; see Supplemental Data Set 1 online). Within this category were a large proportion of genes representative of basal defense with some of them already well characterized during leaf infection (Table 1); for example, an endochitinase (Chit1; Kim et al, 2009), an elicitor-inducible shikimate kinase (SK2; Kasai et al, 2005), certain members of the WRKY family (WRKY71, Chujo et al, 2008;WRKY53, Chujo et al, 2009), or noteworthy, the previously described chitin receptor (chitin-elicitor binding protein, CEBiP; Kaku et al, 2006), a Ser/Thr protein kinase previously reported to be associated with defense against biotrophic rust fungi in other cereals (ORK10; Cheng et al, 2002b), and NAC4, a transcriptional activator involved in the initiation of hypersensitive response-associated cell death (Kaneda et al, 2009). The distinct gene expression pattern was independently confirmed by real-time RT-PCR (see Supplemental Figure 1 online).…”