Based on the OBE (Outcome Based Education) concept, this article analyzes and designs an online and offline teaching path for the teaching needs of aquatic microbiology courses. Firstly, the definition and characteristics of the OBE concept were introduced, as well as its application in education. Then, by setting teaching objectives, selecting teaching content, determining teaching methods, and establishing an evaluation system, a teaching path for aquatic microbiology was designed. Next, the preparation of online teaching paths, environment construction, and activity design were analyzed, as well as the arrangement and implementation of offline experimental teaching, field investigations, and academic exchange activities. Finally, the integration and optimization strategies of online and offline teaching paths were discussed, including the integration and sharing of teaching resources, the coordination of teaching activities, and the evaluation and improvement of teaching effectiveness. Through this study, reference and guidance can be provided for the teaching of aquatic microbiology courses.