We evaluated detection of ertapenem (ETP) resistance and Klebsiella pneumoniae carbapenemase (KPC) in 47 Klebsiella pneumoniae isolates using a novel automated microscopy system. Automated microscopy correctly classified 22/23 isolates as ETP resistant and 24/24 as ETP susceptible and correctly classified 21/21 isolates as KPC positive and 26/26 as KPC negative. C arbapenem-resistant Enterobacteriaceae (CRE) are emerging as a global threat; the plasmid-borne carbapenemase gene bla KPC is the predominant mechanism conferring carbapenem resistance in North America (1-5). This resistance gene has been reported in most species of Enterobacteriaceae, but it is most commonly found in Klebsiella pneumoniae. Timely detection of carbapenem resistance is critical for prompt optimization of antimicrobial therapy, but the sensitivity of antimicrobial susceptibility testing methods for CRE detection is variable and turnaround time can be slow (6-10). It has been demonstrated that in vitro detection of K. pneumoniae carbapenemase (KPC) expression can be difficult, varying by bacterial species and level of enzyme expression.(This study was presented in part at the 113th American Society for Microbiology General Meeting, Denver, CO, May 2013.)The objective of our study was to evaluate automated microscopy for detection of ertapenem (ETP) resistance in K. pneumoniae and the ability to attribute the mechanism of this resistance to the KPC enzyme. Forty-six K. pneumoniae isolates recovered from clinical specimens obtained at Barnes-Jewish Hospital (St. Louis, MO) and one KPC-negative, extended-spectrum -lactamase (ESBL)-positive K. pneumoniae quality control strain, ATCC 700603, were tested (Table 1). The ertapenem and meropenem (MEM) susceptibility profiles of the isolates were determined by disk diffusion according to CLSI standards (11), and isolates were characterized for bla KPC using a laboratory-developed real-time PCR assay (6).For automated microscopy, bacterial suspensions were centrifuged (12,000 ϫ g for 4 min), washed in 1 mM L-histidine buffer at a pH of 7.2, and resuspended in a low-ionic-strength electrokinetic buffer containing 10 mM L-3,4-dihydroxyphenylalanine (L-DOPA) and 1 mM L-histidine at a pH of 7.0 (reagents from SigmaAldrich, St. Louis, MO). This created an inoculum of approximately 1 ϫ 10 6 CFU/ml for testing, and then automated microscopy was performed. Bacterial inocula were pipetted into independent flow cells of a multichannel disposable fluidic cassette (Accelerate Diagnostics Inc., Tucson, AZ). Bacteria were immobilized on the transparent lower surface of each flow cell using electrokinetic concentration (Fig. 1). Mixtures of antibiotics in Mueller-Hinton broth (Becton, Dickinson, Franklin Lakes, NJ) containing 0.85% noble agar (Affymetrix, Santa Clara, CA) were introduced into each flow cell channel. Dark-field images of each flow cell channel were taken at 10-min intervals during a fixed 3-h antibiotic exposure period. An offline image analyzer tracked each immobilized bacterial progenitor cell a...