2015
DOI: 10.1088/1367-2630/17/3/033017
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Biofilm formation in geometries with different surface curvature and oxygen availability

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Cited by 56 publications
(29 citation statements)
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“…Quantitative biofilm structural parameters were calculated, including (1) mean thickness, which identifies the mean distance from the substratum in the direction normal to the substratum where there is biofilm; (2) roughness, a quantity calculated from the thickness distribution and which describes the heterogeneity of the biofilm; (3) substratum coverage, the percentage of substratum area occupied by the biofilm; (4) surface-to-volume ratio, which reflects the fraction of the biofilm area that is exposed to the nutrients; and (5) bio-volume, of the cell polysaccharide matrix, which provides an estimation of the biomass in the biofilm (Chang et al 2015). Biofilm morphological parameters were obtained via MetaMorph 7.5 (Molecular Devices) and COMSTAT software from at least five random images for each sample according to Heydorn et al (2000).…”
Section: Confocal Laser Scanning Microscopy (Clsm) Analysismentioning
confidence: 99%
“…Quantitative biofilm structural parameters were calculated, including (1) mean thickness, which identifies the mean distance from the substratum in the direction normal to the substratum where there is biofilm; (2) roughness, a quantity calculated from the thickness distribution and which describes the heterogeneity of the biofilm; (3) substratum coverage, the percentage of substratum area occupied by the biofilm; (4) surface-to-volume ratio, which reflects the fraction of the biofilm area that is exposed to the nutrients; and (5) bio-volume, of the cell polysaccharide matrix, which provides an estimation of the biomass in the biofilm (Chang et al 2015). Biofilm morphological parameters were obtained via MetaMorph 7.5 (Molecular Devices) and COMSTAT software from at least five random images for each sample according to Heydorn et al (2000).…”
Section: Confocal Laser Scanning Microscopy (Clsm) Analysismentioning
confidence: 99%
“…We fabricate toroidal gels by first forming toroidal droplets of a precursor NIPAM solution, which is then UV-polymerized [12][13][14]. When heated past the lower critical solution temperature (LCST), pNIPAM gels enter a deswollen, polymer-rich phase, characterized by a small volume.…”
mentioning
confidence: 99%
“…In Supplementary Movie 1 a recirculation phenomenon is observed, similar to the one reported by Nash et al . 26 . This is an indication of a collective or swarming-like motion.…”
Section: Resultsmentioning
confidence: 99%