IntroductionMany fungal metabolites, collectively designated as indole alkaloids contain in their structures a prenylated indole nucleus that derives from l -tryptophan and mevalonate. These metabolites include two large groups: (1) the ergot alkaloids produced by plant parasitic Claviceps species [ 1 ], and (2) the indole alkaloids produced by species of Aspergillus , Penicillium , and Neosartorya among others [ 2 ]. These alkaloids differ: (1) in the carbon atom of the indole molecule bearing the isopentenyl group, (2) in modifi cations of the diketopiperazine ring, and (3) in modifi cations of the N1 atom of indole, that are introduced by "late" modifi cation enzymes encoded by additional genes in the clusters.One of the best known indole alkaloid groups is that of the ergot alkaloids [ 1 ] that are reviewed in a separate chapter in this book. Another important group is that of roquefortine C and related indole alkaloids (glandicoline, meleagrin, neoxaline) [ 3 , 4 ]. Several of these mycotoxins are produced by Penicillium species of the Corymbifera family, which infect onions, tulips, and other plant bulbs (Table 6.1 ) [ 5 ]. Others are produced by Penicillium species growing on cheese [ 6 ] or in contaminated food products and cereal grains. The acetylaszonalenin producer N. fi scheri (formerly Aspergillus fi scheri ) is an opportunistic human pathogen closely related to the pathogenic Aspergillus fumigatus [ 7 , 8 ].