Abstract-We study the software simulation of underwater physical communications, namely, underwater acoustic waves and (de)modulation of underwater acoustic digital data signals. We take into account the mobility of nodes, such as in underwater sensor networks. We also consider the integration with protocol layers above the physical layer, i.e., the link and network layers. In this context, mobility is relevant because there are underwater vehicles and environmental conditions causing displacements of sensors. Attenuation is sensitive to transmitter-receiver separation distances. Because of mobility, distances change. Our solution is based on the work of Borrowski (2010). The physical layer is modeled as Matlab functions. As a function of distance and frequency, our physical layer model takes into account attenuation and noise and their effects on a phase-shift keyed signal. We use OMNeT++ to model link and network layer protocols. The Matlab functions and OMNet++ models are linked together. While Matlab does particularly well with signal processing, OMNeT++ addresses better the protocols placed in the link layer and above.