2014
DOI: 10.3791/51482-v
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An Engulfment Assay: A Protocol to Assess Interactions Between CNS Phagocytes and Neurons

Abstract: Phagocytosis is a process in which a cell engulfs material (entire cell, parts of a cell, debris, etc.) in its surrounding extracellular environment and subsequently digests this material, commonly through lysosomal degradation. Microglia are the resident immune cells of the central nervous system (CNS) whose phagocytic function has been described in a broad range of conditions from neurodegenerative disease (e.g., beta-amyloid clearance in Alzheimer's disease) to development of the healthy brain (e.g., synapt… Show more

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Cited by 11 publications
(15 citation statements)
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References 21 publications
(31 reference statements)
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“…For microglia counts, images were processed with the ImageJ software. For microglial morphology and engulfed PSD-95 puncta analysis, 3D reconstruction images were processed as described previously (Schafer et al, 2014) using the Imaris 9.2.1 software (Bitplane).…”
Section: Immunostainingmentioning
confidence: 99%
“…For microglia counts, images were processed with the ImageJ software. For microglial morphology and engulfed PSD-95 puncta analysis, 3D reconstruction images were processed as described previously (Schafer et al, 2014) using the Imaris 9.2.1 software (Bitplane).…”
Section: Immunostainingmentioning
confidence: 99%
“…Some z‐stacks also had the “De‐speckle” and/or “Remove Outliers” function applied (choice guided by the type of background noise present). To facilitate microglia surface rendering (Schafer et al, 2012, 2014), a mean filter (size of 1.5) was additionally applied to Iba‐1 channels. Preprocessed images were transferred from FIJI to Imaris (Oxford Instruments, UK) for quantitative analysis using the “Image from FIJI” function of the ImarisXT Imaris‐ImageJ/FIJI Bridge.…”
Section: Methodsmentioning
confidence: 99%
“…For quantification of myelin debris engulfment in microglia, images were acquired with an FV1200 laser scanning confocal microscope and analyzed by IMARIS (Bitplane, Switzerland) as previously described [ 20 , 21 ]. CD68 and Iba1 volumes were quantified by applying 3D surface rendering of confocal z-stacks in their respective channels.…”
Section: Methodsmentioning
confidence: 99%