The uptake of fluorescently labeled ultrasmall gold nanoparticles (2 nm) by Gram-negative Escherichia coli bacteria occurs within 1-3 hours. This was demonstrated by confocal laser scanning microscopy (CLSM), structured illumination microscopy (SIM), stochastic optical reconstruction microscopy (STORM), and flow cytometry. For imaging, eGFP-expressing and DsRed2expressing E. coli strains were used in addition to non-fluorescing E. coli strains. Gold nanoparticles were labeled with fluoresceine (FITC), Cy3, and AF647, respectively. Importantly, gold nanoparticles showed no toxicity to the bacteria, indicating a non-lethal nature of the uptake, that is, not related to cell injury.