Monoclonal antibodies were raised against a fusion protein consisting of a fragment of 141 amino acids of the C-terminal region of the rat brain voltage-gated K+-channel protein (RCK1) and the AN protein (fusion protein I). Selection of K'-channel-specific hybridoma cell lines was performed by means of an ELISA employing a fusion protein consisting of the K+-channel-specific peptide sequence and glutathione S-transferase (fusion protein 11). For final selection of RCKl isoform-specific antibodies, a panel of Xenopus oocytes was employed, each injected with cRNA coding for a specific RCK isoform (RCK 1, 2, 4 or 5). Several days after injection, cryosections of embedded oocytes were obtained and were employed in immunohistochemical analysis of antibody binding. Of five hybridoma supernatants from stable growing hybridoma cell lines, selected by the fusion-protein ELISA, one monoclonal antibody (denoted K1 C3) recognized exclusively the RCKlprotein isoform, with the other four exhibiting different levels of cross-reactivity with other K+-channel isoforms, or with unknown protein(s) of non-injected oocytes. The expression of the RCKl protein in the postnatal brain was studied using, as far as we are aware, the first example of the application of such isoform-specific antibodies.Voltage-gated K+ channels are important elements of all mammalian excitable cells (for a review, see [l]). Most cells express several subtypes of K' channels, differing in their functional and pharmacological properties [2, 31. A key finding of gene-cloning studies is that, the K' channels form several families. One of them, denoted RCK (rat cortex K+ channel), exists in the mammalian nervous system and consist of at least nine members [l, 4, 51. For example, the RCKl cDNA codes for a polypeptide of 495 amino acid residues corresponding to a molecular mass of 56379 Da [4] for the non-glycosylated polypeptide. From hydropathy profiles, all polypeptides belonging to the RCK family possess six putative membrane-spanning domains (S1-6) [l], with the N-termini and the C-termini protruding into the cytoplasm (Fig. 1 A). Between membrane-spanning domains S 5 and S6 is the H5 domain, proposed to form the inner lining of the channel. The S4 domains were proposed to serve as the voltage sensor of the channel [l]. The sequence similarity of the Correspondence to S. Reinhardt-Maelicke, Institut fur Physiologische Chemie und Pathobiochemie, Johannes-Gutenberg-Universitat, Duesbergweg 6, D-55099 Mainz, GermanyAbbreviations. fp, fusion protein; RCK, rat cortex K' channel. Note. The novel amino acid sequences published here have been submitted to the EMBL sequence data banks and are available under accession numbers X12589 (RCKl), X17621 (RCK2), X16001 (RCK3), X16002 (RCK4) and X16003 RCKS).RCK-protein family is particularly high in the cluster of six membrane-spanning domains (~9 0 % ) and in the N-terminal region (=65%), while there is much lower similarity in the C-terminal region (30-40%, see also Fig. 1 B) [4-61.A study of the cellular and tissue-speci...