It has been assumed that penicillin (and also other cell wall inhibitors) kill pneumococci predominantly by triggering their major autolytic enzyme (an N-acetylmuramoyl-L-alanine amidase; referred to as amidase), resulting in massive cell wall degradation. Three types of experiments suggest that only part of this killing is due to cell lysis by amidase. (i) Suppression of penicillin-induced lysis by specific inhibitors of amidase protected pneumococci only marginally from killing in spite of prolonged exposure to concentrations of penicillin that were lOx, 20x, or lOOx greater than the MIC. (ii) Mutants from which the amidase was completely eliminated by plasmid insertion or deletion (LytV) were still killed, albeit at a slower rate than the wild-type Lyt+ strains (3 to 4 log units instead of 4 to 5 log units per 6 h, i.e., about 1 log unit slower than the wild type; P < 0.001).(iii) A new mutation (cid), which was not related to the amidase gene, further reduced killing of mutants lacking amidase to 1 log unit per 6 h (Lyt-Cid-phenotype). Reintroduction of the amidase gene into Lyt-Cid-cells partilly restored penicillin-induced lysis but increased only slightly the rate of killing (from 1 log unit per 6 h in LytV Cid-cells to 2 log units per 6 h in Lyt+ Cid-cells). We conclude that penicillin kills pneumococci by two distinct mechanisms: one that involves the triggering of the amidase (about 1 log unit of killing per 6 h) and another, amidase-independent mechanism that is responsible for 3 to 4 log units of killing per 6 h. Triggering of the amidase activity in situ in growing bacteria was sigif cantiy reduced in Lyt+ Cid-cells, indicating that there is some regulatory interaction between the cid gene product and the amidase.Many bacteria, including pneumococci, undergo rapid loss of viability accompanied by triggering of the activity of autolytic wall-degrading enzymes and culture lysis when they are exposed to penicillin (or other cell wall inhibitors, such as vancomycin or D-cycloserine). The concurrence of cell death and lysis in these bacteria has led to the widely held belief that the cause of cell death is the suicidal (unregulated) activity of autolytic enzymes. On the other hand, it is also known that in certain species of bacteria penicillin can have powerful bactericidal activity without accompanying autolysis (10,13,18), suggesting that mechanisms other than cell lysis may exist in bacteria for the killing effect of penicillin.In order to clarify the relationship between penicillininduced lysis and killing in pneumococci, we performed a series of experiments using autolysis-inhibiting agents and pneumococcal autolysin mutants carrying a variety of defects in the structural determinant (IytA) of the major autolysin (an N-acetylmuramoyl-L-alanine amidase; referred to as amidase). We also characterized in detail a recently described (19) new type of mutation (cid) that drastically reduces penicillin-induced killing in both wild-type (Lyt+) cells and Lyt-mutants of pneumococci. In addition, in Lyt+ cell...