Abstract-Cholesteryl ester transfer protein (CETP) transfers cholesteryl ester (CE) from HDL to apolipoprotein (apo)B-containing lipoproteins and plays a crucial role in reverse cholesterol transport, which is a major protective system against atherosclerosis. Genetic CETP deficiency is the most common cause of a marked hyperalphalipoproteinemia (HALP) in the Japanese, and various mutations have been identified in the coding region as well as in the exon/intron boundaries in the CETP gene. In the present study, we identified a novel mutation in the promoter region of the CETP gene. This mutation was a G-to-A substitution at the Ϫ69 nucleotide of the promoter region (Ϫ69 G3 A), corresponding to the second nucleotide of the PEA3/ETS binding site (CGGAA) located upstream of the putative TATA box. Four (2.0%) of 196 unrelated subjects with a marked HALP (HDL cholesterol Ն2.59 mmol/Lϭ100 mg/dL) were revealed to be heterozygous for the Ϫ69 G3 A mutation, and the allelic frequency of the mutant was 0.0102 in the subjects with a marked HALP. The subjects with the Ϫ69 G3 A mutation had low plasma CETP levels. Reporter gene assay showed that this mutation markedly reduced the transcriptional activities in HepG2 cells (8% of wild type). These results suggested that this mutation would be dominant negative. In conclusion, a novel Ϫ69 G3 A mutation in the CETP gene causes the decreased transcriptional activity leading to HALP. Key Words: cholesteryl ester transfer protein deficiency Ⅲ hyperalphalipoproteinemia Ⅲ mutation Ⅲ promoter Ⅲ PEA3/ETS binding site C holesteryl ester transfer protein (CETP) is a plasma glycoprotein that catalyzes the transfer of cholesteryl ester (CE) from HDL to apolipoprotein (apo) B-containing lipoproteins and is one of the major determinants of plasma HDL cholesterol levels. 1-3 Genetic CETP deficiency is the most common cause of hyperalphalipoproteinemia (HALP) in the Japanese. 4 -10 It has been demonstrated that a G-to-A substitution at the 5Ј splice donor site of intron 14 (Int14 ϩ1 G3 A) and a missense mutation of exon 15 (D442G) in the CETP gene are common mutations associated with HALP. These 2 mutations are relatively frequent in the Japanese population. 5,7,8,10 Patients with CETP deficiency have moderate hypercholesterolemia and markedly increased levels of HDL cholesterol. The lipoprotein abnormalities in CETP deficiency are also characterized by the presence of polydisperse LDL enriched with triglycerides and large, CE-rich HDL particles. 11-14 These results indicated that CETP is involved in the regulation of plasma lipoproteins by modulating both the quantity and quality of each lipoprotein particle.In addition, CETP plays an important role in reverse cholesterol transport from peripheral tissues to the liver. 15,16 Recently, CETP deficiency has been thought to be a proatherogenic state because of the crucial role of CETP in reverse cholesterol transport despite high HDL cholesterol levels. The study of the Omagari area in Japan, where the Int14 ϩ1 G3 A mutation is extremely frequent...