A Holistic Approach to Determining Stereochemistry of Potential Pharmaceuticals by Circular Dichroism with β-Lactams as Test Cases

Górecki, Marcin; Frelek, Jadwiga

doi:10.3390/ijms23010273

Cited by 2 publications

(1 citation statement)

References 65 publications

(91 reference statements)

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“…This is a very important task in drug development. Usually, electronic circular dichroism is the first choice method, however, vibrational circular dichroism can effectively replace ECD, especially in the absence of UV-vis active chromophores [20]. Although VCD is routinely utilized to determine the absolute configuration in solutions, the use of VCD for solid-state analysis (ssVCD) has been reported relatively rearly [3,19,[21][22][23][24][25][26][27].…”

Section: Introductionmentioning

confidence: 99%

Solid-state vibrational circular dichroism for pharmaceutical applications: polymorphs and cocrystal of sofosbuvir

Kaminsky,

Sklenář,

Růžičková

et al. 2024

Preprint

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X-ray diffraction is a commonly used technique in the pharmaceutical industry for the determination of the atomic and molecular structure of crystals. However, it is costly, sometimes time-consuming, and it requires a considerable degree of expertise. Vibrational circular dichroism (VCD) spectroscopy resolves these limitations, while also exhibiting substantial sensitivity to subtle modifications in the conformation and molecular packaging in the solid state. This study showcases VCD's ability to differentiate between various crystal structures of the identical molecule (polymorphs, cocrystals). We examined the most effective approach for producing high-quality spectra and unveiled the intricate link between structure and spectrum via quantum-chemical computations. We rigorously assessed, using alanine as a model compound, multiple experimental conditions on the resulting VCD spectra, with the aim of proposing an optimal and efficient procedure. The proposed approach, which yields reliable, reproducible and artifact-free results with maximum signal-to-noise ratio, was then validated using a set comprising of three amino acids (serine, alanine, tyrosine), one hydroxy acid (tartaric acid), and a monosaccharide (ribose) to mimic active pharmaceutical components. Finaly, the optimized approach was applied to distinguish three polymorphs of the antiviral drug sofosbuvir and its cocrystal with piperazine. Our results indicates that solid-state VCD is a prompt, cost-effective, and easy-to-use technique to identify crystal structures, demonstrating potential for application in pharmaceuticals. We also adapted the cluster and transfer approach to calculate the spectral properties of molecules in a periodic crystal environment. Our findings demonstrate that this approach reliably produces solid-state VCD spectra of model compounds. Although for large molecules with many atoms per unit cell, such as sofosbuvir, this approach has to be simplified and provides only a qualitative match, spectral calculations and energy analysis helped us to decipher the observed differences in the experimental spectra of sofosbuvir.

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