Hydrogen bonding framework in imidazole derivatives: Crystal structure and Hirshfeld surface analysis

Singh, Praveen; Kumar, Ranjeet; Tewari, Ashish Kumar

doi:10.5155/eurjchem.11.1.50-59.1945

Cited by 3 publications

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“…[1]. Одним з найбільш ефективних та часто застосовуваних квантово-хімічних методів, що дозволяє кількісно оцінити поверхні молекул, охарактеризувати водневі зв'язки, p-p стекінг взаємодії в структурах є метод поверхонь Хіршфельда [2][3][4][5][6][7].…”

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HIRSHFELD SURFACE ANALYSIS OF CRYSTALS OF COMPLEXES - PRODUCTS OF REACTION IN SYSTEMS МХ2 – 1,10-PHENANTHROLINE – GeO2 – CITRIC ACID (М = Ni, Co; X = Cl, CH3COO)

Buchko

2021

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Intermolecular interactions in the coordination compounds of cation-anionic type [Ni(phen)3][Ge(HCit)2]·2H2O (I), [Co(phen)3][Ge(HCit)2]⋅2H2O (II), [Co(H2O)2(phen)2]2[Ge(Cit)2]·4H2O (III) were characterized using Hirshfeld surface analysis. It was established that the biggest contribution in the Hirshfeld surface of anions have been made by the bonds H … В / О …Н (57,8 % (I), 59,6 % (II), 63,9 % (III)), H … H (28,2 % (I), 24,9 % (II), 31,4 % (III)). At the same time interactions C … H / Н … С are less significant (9,6 %, 11,2 % and 3,2 % for I, II, III, respectively). The calculated percentage contribution of different intermolecular interactions of cations in the crystals showed, that, unlike the anions, contacts H … Н (37,9 % (IА), 38,6 % (IB), 36,2 % (IIА и IIB), 38,8 % (III)) play dominating role, while contribution of H … В / О … Н is less (26,5 % (IA and IB), 28,3 % (IIA), 24,5 % (IIB), 26 2 % (III)). Furthermore, interactions C … H / Н … С are more significant than in anions (24,8 % (IА), 27,2 % (IB), 25,6 % (IIА), 26,2 % (IIB), 21,3 % (III). It is typical for cations to have С …С bonds (5,5 % in average) that give contribution less then 1 %. It was determined that voids volume in the crystals of compounds I–III is 751,74 (I), 778,21 (II) and 423,23 (III) Å3 and surface area is 1772,28 (I), 1821,36 (II) and 628,38 (III) Å2. The total volume of the voids (15 % in I, 15,7 %, in II, 22,4 % in III) testifies the lack of big cavities in the frames of the studied compounds. Thereby analysis of intermolecular interactions with the help of Hirshfeld surface analysis showed the dominating role of hydrogen bonds H … O / O …H and contacts H … H, and minor contribution of C … H / H … C and С … С bonds for all studied compounds. The absence of p-p stacking interactions between aromatic rings of 1,10-phenanthroline in the cations of complexes I–III was also pointed out.

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HIRSHFELD SURFACE ANALYSIS OF CRYSTALS OF COMPLEXES - PRODUCTS OF REACTION IN SYSTEMS МХ2 – 1,10-PHENANTHROLINE – GeO2 – CITRIC ACID (М = Ni, Co; X = Cl, CH3COO)

Buchko

2021

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Effect of intermolecular interactions on the glass transition temperature of chemically modified alternating polyketones

González Cortes,

Araya-Hermosilla,

Wrighton-Araneda

et al. 2023

Materials Today Chemistry

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Hydrogen Bonds in the Formation of Copper(ii) 1,10-Phenanthroline Hydroxycarboxylatogermanate Crystals Using Hirshfeld Surface Analysis

et al. 2021

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This article is dedicated to the investigation of crystalline structure in the complex cation-anionic compounds Cu(Phen)2Cl]2[Ge(HCit)2]⋅6H2O (I), [Cu(Phen)3]2[Ge2(OH)(HTart)(μ-Tart)2]·11H2O (II), [CuCl(Phen)2]4[{Ge2(OH)2(μ-Tart)2}Cl2]·4Н2О (III), [Cu(Phen)3]2[(OH)2Ge2(μ-HXylar)4Ge2(μ-OH)2]·8H2O (IV), [CuCl(Phen)2]4[(OH)2Ge2(μ-HXylar)4Ge2(μ-OH)2]·8H2O (V) using Hirshfeld surface analysis. This method has showed itself as an effective tool for analysis of intermolecular interactions, such as hydrogen bonds or weaker C…H and С…Н…p connections. Three-dimensional picture of close interactions in the crystal was built for each of the compounds I–V, where short connections are red-colored, while others – weaker and shorter – are light areas and small spots. It was established that in the structures of all compounds different types of hydrogen bonds are presented: bifurcate connections, symmetrical О-Н…О, С-Н…С and asymmetrical ones with water molecules. Two-dimensional histograms – 2D-fingerprint plots, allowed to evaluate quantitively connections in the crystals and establish that H…O/O…H and H…H interactions make the biggest contribution to the total surface area. The presence of the big number of crystallization water molecules is determinant for the formation of complex system of hydrogen bonds and strengthening of the structure, that otherwise would be unstable because of the big size of cations and anions. Due to the fact, that all compounds have the same complexing agent Ge(IV), structure of the anion is determined by polydentate ligand. Obtained results are important for the further development of the water role in the processes of crystallization, crystal formation, electrical dissociation and, especially, dissolving of coordination compounds in biological systems.

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Hydrogen bonding framework in imidazole derivatives: Crystal structure and Hirshfeld surface analysis

Cited by 3 publications

References 45 publications

HIRSHFELD SURFACE ANALYSIS OF CRYSTALS OF COMPLEXES - PRODUCTS OF REACTION IN SYSTEMS МХ2 – 1,10-PHENANTHROLINE – GeO2 – CITRIC ACID (М = Ni, Co; X = Cl, CH3COO)

HIRSHFELD SURFACE ANALYSIS OF CRYSTALS OF COMPLEXES - PRODUCTS OF REACTION IN SYSTEMS МХ2 – 1,10-PHENANTHROLINE – GeO2 – CITRIC ACID (М = Ni, Co; X = Cl, CH3COO)

Effect of intermolecular interactions on the glass transition temperature of chemically modified alternating polyketones

Hydrogen Bonds in the Formation of Copper(ii) 1,10-Phenanthroline Hydroxycarboxylatogermanate Crystals Using Hirshfeld Surface Analysis

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