Chondroitin sulfates are linear polysaccharides of alternating glucuronic acid and N-acetylgalactosamine, sulfated in varying positions. They form the extracellular framework providing the information for the structural establishment of tissues in multicellular organisms. Growth cones of neurones modulate their outgrowth according to signals received from proteoglycans. The exact molecular structures behind these functions are not fully understood, but structural details of the carbohydrate backbone are crucial. In this report we have employed quantitative cytometry on hippocampal neurite outgrowth in the presence of chondroitin sulfate added in solution to determine the influence of the position and density of the sulfate groups of the N-acetyl-D-galactosamine-residues of chondroitin sulfates. It is of profound interest whether externally added chondroitin sulfates can compete with core protein bound chondroitin sulfate to modulate the effects of tissue-synthesized matrix. In series of microscopic images 3 parameters of neuritic outgrowth activity, neurite length, number of neurites and fasciculation (thickness of neurites) are analyzed at concentrations occurring in intact tissues. Fasciculation increased and number of neurites decreased with high di-sulfation. No significant differences on process length reduction were found between the isotypes. Specificity of effects found is emphasized, as no influence on cell proliferation with U373 human astrocyte cell line is detectable, while neurones clearly are inhibited. The IC 30 and IC 50 values of chondroitin sulfates isoforms are presented for neurones. The data indicate that the soluble fragments from chondroitin sulfate are actively modulating cell development. Besides dosage, sulfation density and position are relevant for effects of chondroitin sulfate in neuronal regenerative activity.Chondroitin sulfate glycosaminoglycans are complex sulfated polysaccharides with a backbone structure composed of a repeating disaccharide building units of 4D-glucuronic acid-b1-3N-acetyl-D-galactosamine-b1. This simple repeat structure undergoes extensive variable modification by sulfation at the C2 or C3 position of D-glucuronic acid residues and/or the C4 or C6 position of N-acetyl-D-galactosamine residues during biosynthesis (Umehara et al. 2004).Diversity in sulfation results in structural variability of chondroitin sulfate chains, which is the basis for their functional diversity. Oversulfated chondroitin sulfate variants chondroitin sulfate-D and chondroitin sulfate-E under certain conditions promote neurite outgrowth, and are characterized by peculiar disulfated disaccharide motifs including D-glucuronic acid -(2-O-sulfate) b1-4N-acetyl-D-galactosamine(6-O-sulfate), or D-glucuronic acid-b1-3N-acetyl-D-galactosamine(4,6-O-disulfate), in chondroitin sulfate-D or chondroitin sulfate-E, respectively.Chondroitin sulfate proteoglycans assist in the structural establishment of tissues in multicellular organisms. They build a stabilized molecular framework and by sp...