The complete mitochondrial genome of Corydoras nattereri (Callichthyidae: Corydoradinae)

Moreira, Daniel A.; Buckup, Paulo Andreas; Britto, Marcelo R.; Magalhães, Maithê Gaspar Pontes; Andrade, Paula; Furtado, Carolina; Parente, Thiago Estevam

doi:10.1590/1982-0224-20150167

Cited by 11 publications

(8 citation statements)

References 26 publications

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“…213.11Aquarium specimen (PA)MNRJ42890KP96056794.70%Moreira et al (2015) [8] Ancistrus multispinis TP00322°32′03.4″S 43°02′18.7″W (RJ)MNRJ41509KT23900696.30%This study Dekeyseria amazonica TP1653°09′36.0″S 59°55′12.0″W (AM)MNRJ43618KX08716898.80%This study Baryancistrus xanthellus sp11.19Aquarium specimen (PA)MissingKX08716799.10%This study Pterygoplichthys sp.sp2Aquarium specimen (RJ)MNRJ43652KX08718196.80%This study Pterygoplichthys pardalis TP1543°09′36.0″S 59°55′12.0″W (AM)MNRJ43607KT23901697.10%This study Pterygoplichthys disjunctivus Not informedNot informedNC015747100%Nakatani et al (2011) [6] Hypostomus sp.sp12.6Aquarium specimen (PA)MNRJ43635KX08717195.40%This study Hypostomus cf. plecostomus TP1643°09′36.0″S 59°55′12.0″W (AM)MNRJ43617KT23901298.50%This study Hypostomus affinis TP14722°48′42.6″S 43°37′42.8″W (RJ)MNRJ43256KT23901393.30%This study Aphanotolurus emarginatus TP1843°10′50.9″S 59°54′09.3″W (AM)MNRJ43631KT23901996.90%This study Peckoltia furcata sp15.2Aquarium specimen (PA)MNRJ43637KX08718096.30%This study Ancistomus snethlageae sp17.2Aquarium specimen (PA)MNRJ43639KX08716698.90%This study Panaqolus sp.sp4Aquarium specimen (RJ)MNRJ43654KX08717799.10%This study Corydoras nattereri TP02122°36′01.6″S 43°05′30.1″W (RJ)MNRJ41520KT239009100%Moreira et al (2016a) [9] Corydoras schwartzi TP177Aquarium s...…”

Section: Resultsmentioning

confidence: 99%

“…plecostomus TP164 3°09′36.0″S 59°55′12.0″W (AM) MNRJ43617 KT239012 98.50% This study Hypostomus affinis TP147 22°48′42.6″S 43°37′42.8″W (RJ) MNRJ43256 KT239013 93.30% This study Aphanotolurus emarginatus TP184 3°10′50.9″S 59°54′09.3″W (AM) MNRJ43631 KT239019 96.90% This study Peckoltia furcata sp15.2 Aquarium specimen (PA) MNRJ43637 KX087180 96.30% This study Ancistomus snethlageae sp17.2 Aquarium specimen (PA) MNRJ43639 KX087166 98.90% This study Panaqolus sp. sp4 Aquarium specimen (RJ) MNRJ43654 KX087177 99.10% This study Corydoras nattereri TP021 22°36′01.6″S 43°05′30.1″W (RJ) MNRJ41520 KT239009 100% Moreira et al (2016a) [ 9 ] Corydoras schwartzi TP177 Aquarium specimen (AM) MNRJ43625 KT239007 98.10% This study Corydoras rabauti Not informed Not informed NC004698 100% Saitoh et al (2003) [ 16 ] …”

Section: Resultsmentioning

confidence: 99%

“…A 17 nucleotide-long insertion was initially noted by Saitoh et al [ 16 ] at the mitogenome of C. rabauti , but this trait was considered phylogenetically uninformative as it was not shared by any other species evaluated in that study [ 16 ]. Subsequently, Moreira et al [ 9 ], observed a homologous 21 nucleotide-long insertion in the mitogenome of C. nattereri and hypothesized this apomorphic trait as relevant for the phylogeny of this speciose genus. The 17 nucleotide-long insertion found in C. schwartzi corroborates and extends that hypothesis.…”

Section: Discussionmentioning

confidence: 99%

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Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

et al. 2017

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BackgroundThe genetic diversity of Neotropical fish fauna is underrepresented in public databases. This distortion is evident for the order Siluriformes, in which the suborders Siluroidei and Loricarioidei share equivalent proportion of species, although far less is known about the genetics of the latter clade, endemic to the Neotropical Region. Recently, this information gap was evident in a study about the structural diversity of fish mitochondrial genomes, and hampered a precise chronological resolution of Siluriformes. It has also prevented molecular ecology investigations about these catfishes, their interactions with the environment, responses to anthropogenic changes and potential uses.ResultsUsing high-throughput sequencing, we provide the nearly complete mitochondrial genomes for 26 Loricariidae and one Callichthyidae species. Structural features were highly conserved. A notable exception was identified in the monophyletic clade comprising species of the Hemiancistrus, Hypostomini and Peckoltia-clades, a ~60 nucleotide-long deletion encompassing the seven nucleotides at the 3′ end of the Conserved Sequence Block (CSB) D of the control region. The expression of mitochondrial genes followed the usual punctuation pattern. Heteroplasmic sites were identified in most species. The retrieved phylogeny strongly corroborates the currently accepted tree, although bringing to debate the relationship between Schizolecis guntheri and Pareiorhaphis garbei, and highlighting the low genetic variability within the Peckoltia-clade, an eco-morphologically diverse and taxonomically problematic group.ConclusionsHerein we have launched the use of high-throughput mitochondrial genomics in the studies of the Loricarioidei species. The new genomic resources reduce the information gap on the molecular diversity of Neotropical fish fauna, impacting the capacity to investigate a variety of aspects of the molecular ecology and evolution of these fishes. Additionally, the species showing the partial CSB-D are candidate models to study the replication and transcription of vertebrate mitochondrial genome.Electronic supplementary materialThe online version of this article (doi:10.1186/s12864-017-3709-3) contains supplementary material, which is available to authorized users.

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Section: Resultsmentioning

confidence: 99%

Section: Resultsmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

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Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

et al. 2017

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“…In this study, the complete mitogenomes of two species of Corydoras (Bronze corydoras C. aeneus Gill, 1858 and peppered corydoras C. paleatus Jenyns, 1842) were sequenced, assembled, and annotated. The genome organization, gene contents, repeat sequences, and tRNA structures of the eleven mitogenomes were compared and analyzed in combination with nine published mitogenomes of Corydoras ( Saitoh et al 2003 ; Moreira et al 2016a , 2017 ; Liu et al 2019a , b , c , d ; Chen et al 2020 ; Lv et al 2020 ). Determining the similarities and differences in gene orders, genetic structures, base compositions, evolutionary features, and codon usage can provide molecular insights into the taxonomic and phylogenetic characteristics of the order Siluriformes .…”

Section: Introductionmentioning

confidence: 99%

Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei

Sun¹,

Huang²,

Zeng³

et al. 2022

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Corydoras is a speciose catfish genus from South America with widely investigated phylogenetic and evolutionary relationships. The complete mitogenomes of C. aeneus and C. paleatus were sequenced, assembled, and annotated using next-generation sequencing. The genome arrangements, gene contents, genome structures, base compositions, evolutionary features, codon usage, and tRNA structures of the two mitogenomes were compared and analyzed with nine published mitogenomes of Corydoras. Phylogenetic analysis was performed using concatenated nucleotide sequences with 13 protein-coding genes and two rRNAs with 44 mitogenomes of Siluriformes. These results provide information on the mitogenomes of eleven Corydoras species and evolutionary relationships within the suborder Loricarioidei, which may be applicable for further phylogenetic and taxonomic studies on Siluriformes and Loricarioidei.

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“…Mousefish is a category fish just named from appearance, such as Corydoras nattereri voucher (Moreira et al. 2016 ), Corydoras panda (Liu, Liu, Xiao, et al. 2019 ), Corydoras duplicareus (Liu, Xu, Xiao 2019 ), Corydoras arcuatus (Liu, Xu, Xiao, Liu 2019 ), and Corydoras sterbai (Liu, Liu, Xu, et al.…”

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Complete mitochondrial genome of Brochis multiradiatus

Liu

et al. 2020

Mitochondrial DNA Part B

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We reported the complete mitochondrial genome yielded by next-generation sequencing of Brochis multiradiatus in this study. The total length of the mitochondrial genome is 16,916 bp, with the base composition of 32.49% A, 25.47% T, 27.12% C, and 14.91% G. It contains 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes, and a major non-coding control region (D-loop region). The arrangement of these genes is the same as that found in the Corydoras. The complete mitochondrial genomes of B. multiradiatus and other 12 species from Siluriformes were used for phylogenetic analysis using neighbor-joining method. The topology demonstrated that all species belong to four genera and are divided into two groups (Siluridae and Callichthyidae), the B. multiradiatus was clustered with genus Corydoras. Brochis multiradiatus’ molecular classification is consistent with the external morphological feature results, so the information of the mitogenome could be used for future identification of Brochis .

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The complete mitochondrial genome of Corydoras nattereri (Callichthyidae: Corydoradinae)

Cited by 11 publications

References 26 publications

Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei

Complete mitochondrial genome of Brochis multiradiatus

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The complete mitochondrial genome of Corydoras nattereri (Callichthyidae: Corydoradinae)

Cited by 11 publications

References 26 publications

Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

Reducing the information gap on Loricarioidei (Siluriformes) mitochondrial genomics

﻿Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei

Complete mitochondrial genome of Brochis multiradiatus

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Comparative analysis of the mitogenomes of two Corydoras (Siluriformes, Loricarioidei) with nine known Corydoras, and a phylogenetic analysis of Loricarioidei