2021
DOI: 10.1093/nar/gkab1007
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Abstract: Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensembl.org). The two resources collectively present genome annotation through a consistent set of interfaces spanning the tree of life presenting genome sequence, annotation, variation, transcriptomic data and comparative analysis. Here, we present our largest increase in plant, metazoan and fungal genomes since the project's i… Show more

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Cited by 147 publications
(75 citation statements)
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“…A new interface is being implemented after researching user interaction patterns, and non-vertebrate genomes are also included for the first time as the database continues on the path to merger with Ensembl genomes. The paper on the latter ( 70 ) reports the largest content increase yet seen including almost 500 new fungal genomes. Other interesting developments include proteome-based removal of redundancy in hosted bacterial genomes, a move to better support pangenomes and inclusion of AlphaFold models for Arabidopsis.…”
Section: New and Updated Databasesmentioning
confidence: 99%
“…A new interface is being implemented after researching user interaction patterns, and non-vertebrate genomes are also included for the first time as the database continues on the path to merger with Ensembl genomes. The paper on the latter ( 70 ) reports the largest content increase yet seen including almost 500 new fungal genomes. Other interesting developments include proteome-based removal of redundancy in hosted bacterial genomes, a move to better support pangenomes and inclusion of AlphaFold models for Arabidopsis.…”
Section: New and Updated Databasesmentioning
confidence: 99%
“…Genes and gene trees were downloaded from in Ensembl v.92 56 , and Ensembl Plants v.41 57 . Ensembl v.92 gene trees were edited for poorly supported duplication nodes as previously described 58 , as part of the standard build procedure for the Genomicus synteny database.…”
Section: Data Collectionmentioning
confidence: 99%
“…All EMBL-EBI data resources are continuously updated to ensure that they are relevant for the research community. EMBL-EBI databases that have had major updates are detailed in articles elsewhere in this issue of Nucleic Acids Research and include Ensembl ( 8 ), Ensembl Genomes ( 9 ), the Ensembl COVID-19 Browser ( 10 ), the European Variation Archive (EVA) ( 11 ), the European Genome-phenome Archive (EGA) ( 12 ), Expression Atlas ( 13 ), Complex Portal ( 14 ), IntAct ( 15 ), Reactome ( 16 ), and PRIDE ( 17 ). Here, we highlight some of the major developments that have been carried out over the last year in a number of other resources.…”
Section: Services Updatesmentioning
confidence: 99%