2017
DOI: 10.1093/gbe/evx030
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Abstract: Sclerotinia sclerotiorum is a phytopathogenic fungus with over 400 hosts including numerous economically important cultivated species. This contrasts many economically destructive pathogens that only exhibit a single or very few hosts. Many plant pathogens exhibit a “two-speed” genome. So described because their genomes contain alternating gene rich, repeat sparse and gene poor, repeat-rich regions. In fungi, the repeat-rich regions may be subjected to a process termed repeat-induced point mutation (RIP). Both… Show more

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Cited by 169 publications
(250 citation statements)
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References 95 publications
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“…From the genome of S. sclerotiorum (Amselem et al ., ; Derbyshire et al ., ), eight proteins containing GATA‐type DNA domains are predicted on the basis of PFAM annotation. These include orthologues of the circadian and photoresponsive white collar proteins (Wc‐1 and Wc‐2), in addition to SsNsd1.…”
Section: Resultsmentioning
confidence: 99%
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“…From the genome of S. sclerotiorum (Amselem et al ., ; Derbyshire et al ., ), eight proteins containing GATA‐type DNA domains are predicted on the basis of PFAM annotation. These include orthologues of the circadian and photoresponsive white collar proteins (Wc‐1 and Wc‐2), in addition to SsNsd1.…”
Section: Resultsmentioning
confidence: 99%
“…The fully genome‐sequenced WT S. sclerotiorum isolate 1980 (Amselem et al ., ; Derbyshire et al ., ) was used to derive all strains in this study. Cultures were routinely grown on PDA (Difco, Detroit, MI, USA) at room temperature.…”
Section: Methodsmentioning
confidence: 99%
“…Genome compartmentalization seems most pronounced in filamentous pathogens with a biotrophic or hemibiotrophic component to their lifestyles that specialize on one or a few host species (Raffaele et al , ; Rouxel et al , ; Spanu et al , ). In contrast, broad host‐range necrotrophic fungal pathogens such as S. sclerotiorum and B. cinerea exhibit relatively repeat‐poor genomes (Derbyshire et al , ; Van Kan et al , ). Nevertheless, effector genes may also be associated with repeat sequences in necrotrophic fungi and fungi with a broad host range (Dallery et al , ; Laurent et al , ; Syme et al , ; Wang et al , ).…”
Section: Discussionmentioning
confidence: 99%
“…Nevertheless, effector genes may also be associated with repeat sequences in necrotrophic fungi and fungi with a broad host range (Dallery et al , ; Laurent et al , ; Syme et al , ; Wang et al , ). Secretome analyses highlighted a number of candidate effector‐like proteins in the genome of S. sclerotiorum (Badet et al , ; Derbyshire et al , ; Guyon et al , ; Heard et al , ). These predicted effector genes associate with repeat sequences (Derbyshire et al , ; Guyon et al , ) and show a high degree of codon adaptation (Badet et al ., ).…”
Section: Discussionmentioning
confidence: 99%
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