By means of limited proteolysis assay, three-dimensional NMR, X-ray crystallography and alanine mutations, a dynamic region at the Q221R222N223 motif in the Bcl-2 homology 3 (BH3) domain of Mcl-1 has been identified as a conformational switch which controls Mcl-1 ubiquitination. Noxa binding biases the QRN motif toward a helical conformation, thus leading to an enhanced in vitro ubiquitination of Mcl-1. In contrast, Bim binding biases the QRN motif toward a nonhelical conformation, thus leading to the inhibition of ubiquitination. A dual function Mcl-1 inhibitor, which locates at the BH3 domain of Mcl-1 and forms hydrogen bond with His224 to drive a helical QRN conformation, so that it not only interferes with the pro-apoptotic partners, but also facilitates Mcl-1 ubiquitination in living cells, is described. As a result, this inhibitor manifests a more effective apoptosis induction in Mcl-1-dependent cancer cells than other inhibitors exhibiting a similar binding affinity with it.

Background and Purpose The biological significance of the multi‐site phosphorylation of Bcl‐2 at its loop region (T69, S70 and S87) has remained controversial for decades. This is a major obstacle for understanding apoptosis and anti‐tumour drug development. Experimental Approach We established a mathematical model into which a phosphorylation and de‐phosphorylation process of Bcl‐2 was integrated. Paclitaxel‐treated breast cancer cells were used as experimental models. Changes in the kinetics of binding with its critical partners, induced by phosphorylation of Bcl‐2 were experimentally obtained by surface plasmon resonance, using a phosphorylation‐mimicking mutant EEE‐Bcl‐2 (T69E, S70E and S87E). Key Results Mathematical simulations combined with experimental validation showed that phosphorylation regulates Bcl‐2 with different dynamics depending on the extent of Bcl‐2 phosphorylation and the phosphorylated Bcl‐2‐induced changes in binding kinetics. In response to Bcl‐2 homology 3 (BH3)‐only protein Bmf stress, Bcl‐2 phosphorylation switched from diminishing to enhancing the Bcl‐2 anti‐apoptotic ability with increased phosphorylation of Bcl‐2, and the turning point was 50% Bcl‐2 phosphorylation induced by 0.2 μM paclitaxel treatment. In contrast, Bcl‐2 phosphorylation enhanced the anti‐apoptotic ability of Bcl‐2 towards other BH3‐only proteins Bim, Bad and Puma, throughout the entire phosphorylation procedure. Conclusions and Implications The model could accurately predict the effects of anti‐tumour drugs that involve the Bcl‐2 family pathway, as shown with ABT‐199 or etoposide.

By means of limited proteolysis assay, three‐dimensional NMR, X‐ray crystallography and alanine mutations, a dynamic region at the Q221R222N223 motif in the Bcl‐2 homology 3 (BH3) domain of Mcl‐1 has been identified as a conformational switch which controls Mcl‐1 ubiquitination. NoxaBH3 binding biases the QRN motif toward a helical conformation, thus leading to an enhanced in vitro ubiquitination of Mcl‐1. In contrast, BimBH3 binding biases the QRN motif toward a nonhelical conformation, thus leading to the inhibition of ubiquitination. A dual function Mcl‐1 inhibitor, which locates at the BH3 domain of Mcl‐1 and forms hydrogen bond with His224 to drive a helical QRN conformation, so that it not only interferes with the pro‐apoptotic partners, but also facilitates Mcl‐1 ubiquitination in living cells, is described. As a result, this inhibitor manifests a more effective apoptosis induction in Mcl‐1‐dependent cancer cells than other inhibitors exhibiting a similar binding affinity with it.

No α-helical mimetic that exhibits Bcl-2/MDM2 dual inhibition has been rationally designed due to the different helicities of the α-helixes at their binding interfaces. Herein, we extracted a one-turn α-helix-mimicking ortho-triarene unit from o-phenylene foldamers. Linking benzamide substrates with a rotatable C-N bond, we constructed a novel semirigid pyramid-like scaffold that could support its two-turn α-helix mimicry without aromatic stacking interactions and could adopt the different dihedral angles of the key residues of p53 and BH3-only peptides. On the basis of this universal scaffold, a series of substituent groups were installed to capture the key residues of both p53TAD and BimBH3 and balance the differences of the bulks between them. Identified by FP, ITC, and NMR spectroscopy, a compound 6e (zq-1) that directly binds to Mcl-1, Bcl-2, and MDM2 with balanced submicromolar affinities was obtained. Cell-based experiments demonstrated its antitumor ability through Bcl-2/MDM2 dual inhibition simultaneously.

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