Transcription activator-like effector nucleases (TALENs) are an approach for directed gene disruption and have been proved to be effective in various animal models. Here, we report that TALENs can induce somatic mutations in Xenopus embryos with reliably high efficiency and that such mutations are heritable through germ-line transmission. We modified the Golden Gate method for TALEN assembly to make the product suitable for RNA transcription and microinjection into Xenopus embryos. Eight pairs of TALENs were constructed to target eight Xenopus genes, and all resulted in indel mutations with high efficiencies of up to 95.7% at the targeted loci. Furthermore, mutations induced by TALENs were highly efficiently passed through the germ line to F 1 frogs. Together with simple and reliable PCR-based approaches for detecting TALEN-induced mutations, our results indicate that TALENs are an effective tool for targeted gene editing/knockout in Xenopus.genome editing | heritable mutagenesis | mutagenesis detection | reverse genetics | genome engineering A mong current animal models, Xenopus laevis and Xenopus tropicalis are classical animal models widely used in the study of embryonic development. However, because of the lack of methodologies for homologous recombination and embryonic stem cell derivation, it is difficult to perform specific gene targeting in these two models, which has impeded their use in genetic studies. Recently, site-specific gene targeting with transcription activator-like effector nucleases (TALENs) has been successfully applied in several animal models including rat, zebrafish, and Caenorhabditis elegans (1-4). Similar to zinc finger nucleases (ZFNs) (5), TALENs are engineered DNA nucleases that consist of a custom-designed DNA-binding domain and a nonspecific nuclease domain derived from Fok I endonuclease. Binding of adjacent TALENs allows dimerization of the endonuclease domains, leading to double-strand breaks at the predetermined site (6). These double-strand DNA breaks are frequently repaired through nonhomologous end joining (NHEJ) (7, 8), resulting in deletion or insertion (indel) mutations. The DNA binding specificity of TALENs, as distinct from ZFNs, is based on the transcription activator-like effectors (TALEs) from Xanthomonas plant pathogens (9, 10). The TALE proteins consist of an N-terminal translocation domain, a nuclear localization signal, and various numbers of tandem 34-aa repeats that determine the DNA binding specificity. Each repeat in the tandem array is identical except for two variable amino acid residues at positions 12 and 13 called repeat variable di-residues (RVDs), through which each repeat independently determines the targeted base (11,12). It is known that the RVDs NI, NG, HD, and NN preferentially recognize adenine (A), thymine (T), cytosine (C), and guanine (G)/adenine (A), respectively (13). With a given repeat combination, the TALE recognizes a specific target sequence predicted by this code. A pair of TALENs can then cleave doublestrand DNA between the two targ...
Kindlins and talins are integrin-binding proteins that are critically involved in integrin activation, an essential process for many fundamental cellular activities including cell-matrix adhesion, migration, and proliferation. As FERM-domain-containing proteins, talins and kindlins, respectively, bind different regions of β-integrin cytoplasmic tails. However, compared with the extensively studied talin, little is known about how kindlins specifically interact with integrins and synergistically enhance their activation by talins. Here, we determined crystal structures of kindlin2 in the apo-form and the β1-and β3-integrin bound forms. The apo-structure shows an overall architecture distinct from talins. The complex structures reveal a unique integrin recognition mode of kindlins, which combines two binding motifs to provide specificity that is essential for integrin activation and signaling. Strikingly, our structures uncover an unexpected dimer formation of kindlins. Interrupting dimer formation impairs kindlin-mediated integrin activation. Collectively, the structural, biochemical, and cellular results provide mechanistic explanations that account for the effects of kindlins on integrin activation as well as for how kindlin mutations found in patients with Kindler syndrome and leukocyte-adhesion deficiency may impact integrin-mediated processes.I ntegrins, composed of α-and β-subunits, are the major receptors mediating the cell-extracellular matrix (ECM) adhesion (1-3). By connecting specific ECM proteins and diverse cytoskeletal regulators, integrins mediate bidirectional transmembrane signaling (4, 5). Stable integrin-ECM interaction and subsequent signaling require integrin activation, which was reported to be mediated by talin, a 4.1-protein/ezrin/radixin/moesin (FERM) domain-containing protein (6). Recently, kindlins, another family of FERM-containing proteins, were found to play crucial roles in integrin activation and signaling (7-12).The kindlin family consists of three members in vertebrates, kindlin1/2/3, each containing a FERM domain and a PH domain (Fig. 1A) (13). Compared with the typical FERM domain that consists of three lobes (F1, F2, and F3), kindlin-FERM contains an additional N-terminal F0 lobe. In kindlins, the F1 and F2 lobes are split by a largely unstructured insertion and the PH domain, respectively (Fig. 1A). Kindlins, although sharing high sequence similarity (SI Appendix, Fig. S1), show distinct tissue distributions and nonredundant functions. Kindlin1 is expressed mainly in epithelia, and nonfunctional kindlin1 mutations lead to Kindler syndrome, a congenital skin disease (14-16). Expression of kindlin3 is restricted to the hematopoietic system, and mutations in kindlin3 were found to associate with leukocyte-adhesion deficiency type III (LADIII) (17, 18). Kindlin2 is ubiquitously expressed, and loss of kindlin2 in mice leads to peri-implantation lethality (11). Kindlins are also involved in tumorigenesis and metastasis (19). The kindlin-associated diseases are due, at least in part...
Retinoic acid (RA) is a morphogen derived from retinol (vitamin A) that plays important roles in cell growth, differentiation, and organogenesis. The production of RA from retinol requires two consecutive enzymatic reactions catalyzed by different sets of dehydrogenases. The retinol is first oxidized into retinal, which is then oxidized into RA. The RA interacts with retinoic acid receptor (RAR) and retinoic acid X receptor (RXR) which then regulate the target gene expression. In this review, we have discussed the metabolism of RA and the important components of RA signaling pathway, and highlighted current understanding of the functions of RA during early embryonic development.
Mesenchymal stem cell (MSC) fate decision is strongly influenced by cell microenvironment. Guo et al. identify kindlin-2 as a key determinant of MSC lineage commitment and delineate a novel signaling pathway consisting of kindlin-2, RhoA, MLCK, AIP4, and YAP1/TAZ that senses mechanical cues of the cell microenvironment and controls MSC differentiation.
Arf (ADP-ribosylation factor) family small G proteins are crucial regulators of intracellular transport. The active GTP-bound form of Arf interacts with a set of proteins-effectors-which mediate the downstream signalling events of Arf activation. A well-studied class of Arf1 effectors comprises the coat complexes, such as the cis-Golgi-localized COPI (coat protein complex I) coat, and transGolgi network-endosomal clathrin coats. At least five different coats require Arf1-GTP to localize to organelle membranes. How a single Arf protein recruits different coat complexes to distinct membrane sites raises the question of how specificity is achieved. Here, we propose a molecular mechanism of this specificity for the COPI coat by showing a direct and specific interaction between a COPI subunit and a cis-Golgi localized subfamily of Arf guanine nucleotide exchange factors (GEFs) that takes place independently of Arf1 activation. In this way, a specific output on Arf1 activation can be programmed before the exchange reaction by the GEF itself.
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