A Lens map was developed based on the segregational analysis of five kinds of molecular and morphological genetic markers in 113 F(2) plants obtained from a single hybrid of Lens culinaris ssp. culinaris x L. c. ssp. orientalis. A total of 200 markers were used on the F(2) population, including 71 RAPDs, 39 ISSRs, 83 AFLPs, two SSRs and five morphological loci. The AFLP technique generated more polymorphic markers than any of the others, although AFLP markers also showed the highest proportion (29.1%) of distorted segregation. At a LOD score of 3.0, 161 markers were grouped into ten linkage groups covering 2,172.4 cM, with an average distance between markers of 15.87 cM. There were six large groups with 12 or more markers each, and four small groups with two or three markers each. Thirty-nine markers were unlinked. A tendency for markers to cluster in the central regions of large linkage groups was observed. Likewise, clusters of AFLP, ISSR or RAPD markers were also observed in some linkage groups, although RAPD markers were more evenly spaced along the linkage groups. In addition, two SSR, three RAPD and one ISSR markers segregated as codominant. ISSR markers are valuable tools for Lens genetic mapping and they have a high potential in the generation of saturated Lens maps.
Lentil quantitative trait loci (QTL) related to plant structure (branches at first node, height of first node, total number of branches, plant height), growth habit (flowering time, pod dehiscence) and yield (number of seeds, seed weight, seed diameter) were located using a F2 population of 113 individuals derived from the intersubspecific cross of Lens culinaris ssp. culinaris and L. c. ssp. orientalis. Several traits were found to be significantly correlated. Using interval and composite interval mapping a total of 23 QTL for nine quantitative traits were located. No QTL was identified for the number of F3 seed produced. Six QTL were positioned respectively in linkage groups III and VI, and five QTL in linkage group I. Each remaining group included one or two QTL, except groups VII and IX where no QTL was found. The multiple QTL model explained more than 80% of the observed phenotypic variance with logarithm of the odds (LOD) scores above 10 for three of the quantitative traits analyzed (branches at first node, flowering time, and dehiscence). For the remaining traits the phenotypic variance explained was relatively low, between the 50% and 20%, and the LOD scores ranged between 4 and 8. The possible homology between some QTL and other previously described is discussed in relation to their chromosomal location.
The genetic variation of a collection of twenty-two Lens accessions was assessed using RAPD and ISSR markers. The collection included accessions of the cultivated lentil, Lens culinaris ssp. culinaris, and its wild ancestor L. c. ssp. orientalis, and the other wild species of the genus: L. odemensis, L. ervoides, L. nigricans, L. tomentosus, and L. lamottei. Both types of markers produced a relatively high number of polymorphic markers in the whole collection, although the degree of variation within the cultivated materials was lower. ISSR markers produced on average more bands and useful polymorphisms than RAPD markers. The Fitch-Margoliash dendrogram, based on Jaccard indices taking jointly RAPD and ISSR into account, showed that the cultivated materials were grouped according to their macro- and microsperma type and their geographical origin, and was compatible with the hypothesis of the existence of six different species in the genus Lens, with L. tomentosus being the closest species to L. culinaris.
An arsenic resistance genomic island in the bacterium Klebsiella michiganensis 3T412C was isolated from mine tailings from Peru. This genomic island confers adaptation to extreme environments with high concentrations of arsenic. Isolate 3T412C contained a complete set of genes involved in resistance to arsenic. This operon is surrounded by putative genes for resistance to other heavy metals.
Mine tailings are produced by mining activities and contain diverse heavy metal ions, which cause environmental problems and have negative impacts on ecosystems. Different microorganisms, including yeasts, play important roles in the absorption and/or adsorption of these heavy metal ions. This work aimed to analyze proteins synthesized by the yeast Yarrowia lipolytica AMJ6 (Yl-AMJ6), isolated from Andean mine tailings in Peru and subjected to stress conditions with common heavy metal ions. Yeast strains were isolated from high Andean water samples impacted by mine tailings from Yanamate (Pasco, Peru). Among all the isolated yeasts, the Yl-AMJ6 strain presented LC50 values of 1.06 mM, 1.42 mM, and 0.49 mM for the Cr+6, Cu+2, and Cd+2 ions, respectively. Proteomic analysis of theYl-AMJ6 strain under heavy metal stress showed that several proteins were up- or downregulated. Biological and functional analysis of these proteins showed that they were involved in the metabolism of proteins, nucleic acids, and carbohydrates; response to oxidative stress and protein folding; ATP synthesis and ion transport; membrane and cell wall; and cell division. The most prominent proteins that presented the greatest changes were related to the oxidative stress response and carbohydrate metabolism, suggesting the existence of a defense mechanism in these yeasts to resist the impact of environmental contamination by heavy metal ions.
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