The development of targeted anti-cancer therapies through the study of cancer genomes is intended to increase survival rates and decrease treatment-related toxicity. We treated a transposon–driven, functional genomic mouse model of medulloblastoma with ‘humanized’ in vivo therapy (microneurosurgical tumour resection followed by multi-fractionated, image-guided radiotherapy). Genetic events in recurrent murine medulloblastoma exhibit a very poor overlap with those in matched murine diagnostic samples (<5%). Whole-genome sequencing of 33 pairs of human diagnostic and post-therapy medulloblastomas demonstrated substantial genetic divergence of the dominant clone after therapy (<12% diagnostic events were retained at recurrence). In both mice and humans, the dominant clone at recurrence arose through clonal selection of a pre-existing minor clone present at diagnosis. Targeted therapy is unlikely to be effective in the absence of the target, therefore our results offer a simple, proximal, and remediable explanation for the failure of prior clinical trials of targeted therapy.

Summary Malignant rhabdoid tumors (MRT) are rare, lethal tumors of childhood that most commonly occur in the kidney and brain. MRT are driven by SMARCB1 loss, but the molecular consequences of SMARCB1 loss in extra-cranial tumors have not been comprehensively described and genomic resources for analyses of extra-cranial MRT are limited. To provide such data, we used whole genome sequencing, whole genome bisulfite sequencing, whole transcriptome (RNA-Seq) and miRNA sequencing (miRNA-Seq), and histone modification profiling to characterize extra-cranial MRT. Our analyses revealed gene expression and methylation sub-groups and focused on dysregulated pathways, including those involved in neural crest development.

Rate constants for the reactions of OH radicals with dimethyl methylphosphonate [DMMP, (CH3O)2P(O)CH3], dimethyl ethylphosphonate [DMEP, (CH3O)2P(O)C2H5], diethyl methylphosphonate [DEMP, (C2H5O)2P(O)CH3], diethyl ethylphosphonate [DEEP, (C2H5O)2P(O)C2H5], triethyl phosphate [TEP, (C2H5O)3PO] and 1,3,5-trimethylbenzene have been measured over the temperature range 278-348 K at atmospheric pressure of air using a relative rate method. alpha-Pinene (for DEMP, DEEP, TEP and 1,3,5-trimethylbenzene) and di-n-butyl ether (for DMMP and DMEP) were used as the reference compounds, and rate constants for the reaction of OH radicals with di-n-butyl ether were also measured over the same temperature range using alpha-pinene and n-decane as the reference compounds. The Arrhenius expressions obtained for these OH radical reactions (in cm3 molecule(-1) s(-1) units) are 8.00 x 10(-14)e(1470+/-132)/T for DMMP (296-348 K), 9.76 x 10(-14)e(1520+/-14)/T for DMEP (296-348 K), 4.20 x 10(-13)e(1456+/-227)/T for DEMP (296-348 K), 6.46 x 10(-13)e(1339+/-376)/T for DEEP (296-348 K), 4.29 x 10(-13)e(1428+/-219)/T for TEP (296-347 K), and 4.40 x 10(-12)e(738+/-176)/T for 1,3,5-trimethylbenzene (278-347 K), where the indicated errors are two least-squares standard deviations and do not include the uncertainties in the rate constants for the reference compounds. The measured rate constants for di-n-butyl ether are in good agreement with literature data over the temperature range studied (278-348 K).

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The hydration rates of 12 obsidian samples of different chemical compositions were measured at temperatures from 95 degrees to 245 degrees C. An expression relating hydration rate to temperature was derived for each sample. The SiO(2) content and refractive index are related to the hydration rate, as are the CaO, MgO, and original water contents. With this information it is possible to calculate the hydration rate of a sample from its silica content, refractive index, or chemical index and a knowledge of the effective temperature at which the hydration occurred. The effective hydration temperature can be either measured or approximated from weather records. Rates have been calculated by both methods, and the results show that weather records can give a good approximation to the true EHT, particularly in tropical and subtropical climates. If one determines the EHT by any of the methods suggested, and also measures or knows the rate of hydration of the particular obsidian used, it should be possible to carry out absolute dating to +/- 10 percent of the true age over periods as short as several years and as long as millions of years.