Exiguobacterium antarcticum strain B7 is a psychrophilic Gram-positive bacterium that possesses enzymes that can be used for several biotechnological applications. However, many proteins from its genome are considered hypothetical proteins (HPs). These functionally unknown proteins may indicate important functions regarding the biological role of this bacterium, and the use of bioinformatics tools can assist in the biological understanding of this organism through functional annotation analysis. Thus, our study aimed to assign functions to proteins previously described as HPs, present in the genome of E. antarcticum B7. We used an extensive in silico workflow combining several bioinformatics tools for function annotation, sub-cellular localization and physicochemical characterization, three-dimensional structure determination, and protein-protein interactions. This genome contains 2772 genes, of which 765 CDS were annotated as HPs. The amino acid sequences of all HPs were submitted to our workflow and we successfully attributed function to 132 HPs. We identified 11 proteins that play important roles in the mechanisms of adaptation to adverse environments, such as flagellar biosynthesis, biofilm formation, carotenoids biosynthesis, and others. In addition, three predicted HPs are possibly related to arsenic tolerance. Through an in vitro assay, we verified that E. antarcticum B7 can grow at high concentrations of this metal. The approach used was important to precisely assign function to proteins from diverse classes and to infer relationships with proteins with functions already described in the literature. This approach aims to produce a better understanding of the mechanism by which this bacterium adapts to extreme environments and to the finding of targets with biotechnological interest.
Fourteen mycobacterial strains isolated from pulmonary samples of independent patients in the state of Pará (Brazil), and three strains isolated in Italy, were characterized using a polyphasic approach. Thorough genetic investigation, including whole-genome sequencing, demonstrated that the strains belong to the M. simiae complex, being most closely related to Mycobacterium interjectum. For 14 of the strains, evidence emerged supporting their inclusion in a previously unreported species of the genus Mycobacterium, for which the name Mycobacterium paraense sp. nov. is proposed (type strain, IEC26 T 5DSM 46749 T 5CCUG 66121 T ). The novel species is characterized by slow growth, unpigmented or pale yellow scotochromogenic colonies, and a HPLC mycolic acid profile different from other known mycobacteria. In different genetic regions, high sequence microheterogeneity was detected.The mycobacteria related to Mycobacterium simiae constitute, at the time of writing, the largest group or complex within the genus Mycobacterium. The group actually includes 17 officially recognized species (Tortoli et al., 2011).Seventeen strains sharing phenotypic and genotypic characteristics consistent with this complex were isolated, in many cases repeatedly (39 isolations in total), from 16 patients with pulmonary symptoms. Most of such mycobacteria were found during the reidentification (by means of DNA sequencing) of clinical isolates, which, with PCR Restriction Analysis (PRA), had either been previously identified as Mycobacterium asiaticum, or had presented unknown PRA-patterns (da Costa et al., 2010). The genetic sequences of these strains showed a high degree of similarity, with Mycobacterium interjectum (Springer Abbreviations: ITS, internal transcribed spacer; SNPs, single nucleotide polymorphisms.
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Aim: Serratia marcescens is pathogen associated with nosocomial outbreaks among immunocompromised individuals. Molecular typing methods are useful tools for determining genetic relationships among bacterial isolates. The present study reports the analysis of the clonal relationships among S. marcescens isolates from an outbreak occurred in the neonatal unit (NU) at a referral public hospital of Belém, Pará, Brazilian Amazon, using PFGE and rep-PCR.Material and Methods: Thirty isolates were obtained from referral hospital in the Brazilian Amazon. The molecular typing of isolates was performed using pulsed field gel electrophoresis (PFGE) and semiautomated rep-PCR in the DiversiLab System®.Results: Results revealed that by PFGE there was the formation of three main clusters containing three, 13 and nine isolates. The DiversiLab rep-PCR analysis identified an agreement of 80.64% (25 of the 31 strains) compared to PFGE.
Conclusions:The semiautomated rep-PCR was similarly efficient as the PFGE for S. marcescens, demonstrating to be as efficient tool for outbreaks investigation.
We report here the draft genome sequence of Corynebacterium pseudotuberculosis PA05, isolated from an ovine host in Pará State, Brazil. C. pseudotuberculosis is an etiological agent of diseases with veterinary and medical importance. The genome contains 2,435,137 bp, a G+C content of 52.2%, 2,295 coding sequences, five pseudogenes, 53 tRNAs, and six rRNAs.
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