Spatial synchrony, defined as correlated temporal fluctuations among populations, is a fundamental feature of population dynamics, but many aspects of synchrony remain poorly understood. Few studies have examined detailed geographical patterns of synchrony; instead most focus on how synchrony declines with increasing linear distance between locations, making the simplifying assumption that distance decay is isotropic. By synthesising and extending prior work, we show how geography of synchrony, a term which we use to refer to detailed spatial variation in patterns of synchrony, can be leveraged to understand ecological processes including identification of drivers of synchrony, a long-standing challenge. We focus on three main objectives: (1) showing conceptually and theoretically four mechanisms that can generate geographies of synchrony; (2) documenting complex and pronounced geographies of synchrony in two important study systems; and (3) demonstrating a variety of methods capable of revealing the geography of synchrony and, through it, underlying organism ecology. For example, we introduce a new type of network, the synchrony network, the structure of which provides ecological insight. By documenting the importance of geographies of synchrony, advancing conceptual frameworks, and demonstrating powerful methods, we aim to help elevate the geography of synchrony into a mainstream area of study and application.

Sporadic inclusion body myositis (IBM) is the most common inflammatory myopathy affecting patients over the age of 50 years. Dysimmune and degenerative aetiologies have been postulated, but viral infections have not been associated with the disease. Two HIV-I (human immunodeficiency virus type 1) infected men and one woman infected with HTLV-1 (human T cell leukaemia virus type 1) developed progressive proximal muscle weakness unrelated to antiretroviral therapy. Their muscle biopsies were studied by light and electron microscopy, by immunocytochemistry to determine the expression of major histocompatibility complex (MHC) molecules and identify the type of infiltrating cells and T cell receptor (TCR) subunits, and by reverse transcription-polymerase chain reaction (RT-PCR) and single or double immunocytochemistry to search for retrovirally infected endomysial cells. The clinical features were consistent with sporadic IBM. The muscle biopsies showed primary endomysial inflammation, red-rimmed vacuoles, amyloid deposits, eosinophilic inclusions, and small round fibres in groups, all diagnostic of IBM. The muscle fibres expressed MHC class-1 antigens and were invaded primarily by CD8+ T-lymphocytes preferentially bearing TCR V beta 5.1 and V beta 13 chains. The HIV-1 or HTLV-1 antigens were detected only on endomysial macrophages on or around muscle fibres, but not within the muscle fibres. We conclude that IBM occurs in HIV-1 and HTLV-1 infected individuals and has a clinical, histological and immunological pattern identical to sporadic IBM in the non-retrovirally infected patients. Retroviruses do not directly infect the muscle, but persistent retroviral infections may provide superantigenic stimulation and trigger an endomysial inflammatory response identical to that occurring in sporadic IBM.

Loss or alteration of natural wetland habitats is a near ubiquitous global phenomenon. In the US, legislation mandates that all lost wetland habitats be replaced; manmade wetland habitats rarely have the same structural form or ecological function as natural wetlands. In the eastern US, these manmade pond habitats often serve as water sources for wildlife, but many are also utilized by amphibians for reproduction. Understanding the features that maximize species' abundance and diversity is critical to effective management. In this study, we surveyed for ambystomatid salamander larvae at 169 manmade ponds in a military training installation. Three species were present: Ambystoma maculatum, A. opacum and the regionally endemic A. annulatum. We estimated larval densities in each pond in relation to landscape-and pond-level covariates. Important factors relating to larval density were forest habitat surrounding each pond, canopy cover over a pond, the number of ponds within 300 m of the focal pond, presence of fish, slope of the pond basin, hydroperiod and amount of vegetation within the pond. Density estimates for each species were best predicted by different combinations of these factors, underscoring the need to provide a range of pond habitats to promote species diversity on the landscape. Our results indicate that manmade ponds are providing a valuable reproductive resource, but that future construction of ponds on the landscape will best serve the salamander and broader amphibian community if different combinations of hydroperiod and slope are utilized.

URL: https://clinicaltrials.gov. Unique identifier: NCT00861081.