Salinity observing satellites have the potential to monitor river freshwater plumes mesoscale spatiotemporal variations better than any other observing system. In the case of the Soil Moisture and Ocean Salinity (SMOS) satellite mission, this capacity was hampered due to the contamination of SMOS data processing by strong land-sea emissivity contrasts. Kolodziejczyk et al. (2016) (hereafter K2016) developed a methodology to mitigate SMOS systematic errors in the vicinity of continents, that greatly improved the quality of the SMOS Sea Surface Salinity (SSS). Here, we find that SSS variability, however, often remained underestimated, such as near major river mouths. We revise the K2016 methodology with: a) a less stringent filtering of measurements in regions with high SSS natural variability (inferred from SMOS measurements) and b) a correction for seasonally-varying latitudinal systematic errors. With this new mitigation, SMOS SSS becomes more consistent with the independent SMAP SSS close to land, for instance capturing consistent spatio-temporal variations of low salinity waters in the Bay of Bengal and Gulf of Mexico. The standard deviation of the differences between SMOS and SMAP weekly SSS is <0.3 pss in most of the open ocean. The standard deviation of the differences between 18-day SMOS SSS and 100-km averaged ship SSS is 0.20 pss (0.24 pss before correction) in the open ocean. Even if this standard deviation of the differences increases closer to land, the larger SSS variability yields a more favorable signal-to-noise ratio, with r2 between SMOS and SMAP SSS larger than 0.8. The correction also reduces systematic biases associated with man-made Radio Frequency Interferences (RFI), although SMOS SSS remains more impacted by RFI than SMAP SSS. This newly-processed dataset will allow the analysis of SSS variability over a larger than 8 years period in regions previously heavily influenced by land-sea contamination, such as the Bay of Bengal or the Gulf of Mexico. Highlights ► Improved SMOS salinity systematic error correction from Kolodziejczyk et al. (2016) ► Refined variability of sea surface salinity near e.g. major river mouths ► Consistent mesoscale patterns observed by SMOS and SMAP satellite missions

Abstract. In situ observation of the marine environment has traditionally relied on ship-based platforms. The obvious consequence is that physical and biogeochemical properties have been dramatically undersampled, especially in the remote Southern Ocean (SO). The difficulty in obtaining in situ data represents the major limitations to our understanding, and interpretation of the coupling between physical forcing and the biogeochemical response. Southern elephant seals (Mirounga leonina) equipped with a new generation of oceanographic sensors can measure ocean structure in regions and seasons rarely observed with traditional oceanographic platforms. Over the last few years, seals have allowed for a considerable increase in temperature and salinity profiles from the SO, but we were still lacking information on the spatiotemporal variation of phytoplankton concentration. This information is critical to assess how the biological productivity of the SO, with direct consequences on the amount of CO2 "fixed'' by the biological pump, will respond to global warming. In this research programme, we use an innovative sampling fluorescence approach to quantify phytoplankton concentration at sea. For the first time, a low energy consumption fluorometer was added to Argos CTD-SRDL tags, and these novel instruments were deployed on 27 southern elephant seals between 25 December 2007 and the 4 February 2011. As many as 3388 fluorescence profiles associated with temperature and salinity measurements were thereby collected from a vast sector of the Southern Indian Ocean. This paper addresses the calibration issue of the fluorometer before being deployed on elephant seals and presents the first results obtained for the Indian sector of the Southern Ocean. This in situ system is implemented in synergy with satellite ocean colour radiometry. Satellite-derived data is limited to the surface layer and is restricted over the SO by extensive cloud cover. However, with the addition of these new tags, we are able to assess the 3-dimension distribution of phytoplankton concentration by foraging southern elephant seals. This approach reveals that for the Indian sector of the SO, the surface chlorophyll a (chl a) concentrations provided by MODIS were underestimated by a factor 2 compared to chl a concentrations estimated from HPLC corrected in situ fluorescence measurements. The scientific outcomes of this programme include an improved understanding of both the present state and variability in ocean biology, and the accompanying biogeochemistry, as well as the delivery of real-time and open-access data to scientists (doi:10.7491/MEMO.1).