The ability of psychrophiles to survive and proliferate at low temperatures implies that they have overcome key barriers inherent to permanently cold environments. These challenges include: reduced enzyme activity; decreased membrane fluidity; altered transport of nutrients and waste products; decreased rates of transcription, translation and cell division; protein cold-denaturation; inappropriate protein folding; and intracellular ice formation. Cold-adapted organisms have successfully evolved features, genotypic and/or phenotypic, to surmount the negative effects of low temperatures and to enable growth in these extreme environments. In this review, we discuss the current knowledge of these adaptations as gained from extensive biochemical and biophysical studies and also from genomics and proteomics.

Psychrophilic, mesophilic, and thermophilic ␣-amylases have been studied as regards their conformational stability, heat inactivation, irreversible unfolding, activation parameters of the reaction, properties of the enzyme in complex with a transition state analog, and structural permeability. These data allowed us to propose an energy landscape for a family of extremophilic enzymes based on the folding funnel model, integrating the main differences in conformational energy, cooperativity of protein unfolding, and temperature dependence of the activity. In particular, the shape of the funnel bottom, which depicts the stability of the native state ensemble, also accounts for the thermodynamic parameters of activation that characterize these extremophilic enzymes, therefore providing a rational basis for stability-activity relationships in protein adaptation to extreme temperatures.Our planet harbors a huge number of harsh environments that are considered as "extreme" from an anthropocentric point of view, as far as temperature, pH, osmolarity, free water, or pressure are concerned. Nevertheless, these peculiar biotopes have been successfully colonized by numerous organisms, mainly extremophilic bacteria and archaea. As the curiosity of scientists stimulates the exploration of new environments, it seems that there is no "empty space" for life on Earth and, for instance, even the supercooled cloud droplets contain actively growing bacteria (1). Among the extremophilic microorganisms, those living at extreme temperatures have attracted much attention. Thermophiles have revealed the unsuspected upper temperature for life at about 113°C (2, 3). Their enzymes have also demonstrated a considerable biotechnological potential such as the various thermostable DNA polymerases used in PCR that have boosted many laboratory techniques. At the other end of the temperature scale, metabolically active psychrophilic bacteria have been detected in liquid brine veins of sea ice at Ϫ20°C (4). These cold-loving microorganisms face the thermodynamic challenge to maintain enzyme-catalyzed reactions and metabolic rates compatible with sustained growth near or below the freezing point of pure water (5, 6). Directed evolution experiments have highlighted that, in theory, cold activity of enzymes can be gained by several subtle adjustments of the protein structure (7). However, in natural cold environments, the consensus for the adaptive strategy is to take advantage of the lack of selective pressure for stable proteins for losing stability, therefore making the enzyme more mobile or flexible at temperatures that "freeze" molecular motions and reaction rates (8).The crystal structures of extremophilic enzymes unambiguously indicate a continuum in the molecular adaptations to temperature. There is indeed a clear increase in the number and strength of all known weak interactions and structural factors involved in protein stability from psychrophiles to mesophiles (living at intermediate temperatures close to 37°C) and to thermophiles (2, 9 -1...

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A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the genome sequence of the fast growing Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. We find that it copes with the increased solubility of oxygen at low temperature by multiplying dioxygen scavenging while deleting whole pathways producing reactive oxygen species. Dioxygen-consuming lipid desaturases achieve both protection against oxygen and synthesis of lipids making the membrane fluid. A remarkable strategy for avoidance of reactive oxygen species generation is developed by P. haloplanktis, with elimination of the ubiquitous molybdopterin-dependent metabolism. The P. haloplanktis proteome reveals a concerted amino acid usage bias specific to psychrophiles, consistently appearing apt to accommodate asparagine, a residue prone to make proteins age. Adding to its originality, P. haloplanktis further differs from its marine counterparts with recruitment of a plasmid origin of replication for its second chromosome.[Supplemental material is available online at www.genome.org. The sequence data from this study have been submitted to EMBL under accession nos. CR954246 and CR954247.

In the last few years, increased attention has been focused on a class of organisms called psychrophiles. These organisms, hosts of permanently cold habitats, often display metabolic fluxes more or less comparable to those exhibited by mesophilic organisms at moderate temperatures. Psychrophiles have evolved by producing, among other peculiarities, "cold-adapted" enzymes which have the properties to cope with the reduction of chemical reaction rates induced by low temperatures. Thermal compensation in these enzymes is reached, in most cases, through a high catalytic efficiency associated, however, with a low thermal stability. Thanks to recent advances provided by X-ray crystallography, structure modelling, protein engineering and biophysical studies, the adaptation strategies are beginning to be understood. The emerging picture suggests that psychrophilic enzymes are characterized by an improved flexibility of the structural components involved in the catalytic cycle, whereas other protein regions, if not implicated in catalysis, may be even more rigid than their mesophilic counterparts. Due to their attractive properties, i.e., a high specific activity and a low thermal stability, these enzymes constitute a tremendous potential for fundamental research and biotechnological applications.