Abstract:The cavity inside fullerenes provides a unique environment for the study of isolated atoms and molecules. We report encapsulation of hydrogen fluoride inside C 60 using molecular surgery to give the endohedral fullerene HF@C 60 . The key synthetic step is the closure of the open fullerene cage while minimizing escape of HF. The encapsulated HF molecule moves freely inside the cage and exhibits quantization of its translational and rotational degrees of freedom, as revealed by inelastic neutron scattering and infrared spectroscopy. The rotational and vibrational constants of the encapsulated HF molecules were found to be redshifted relative to free HF. The NMR spectra display a large 1 H-19 F Jcoupling typical of an isolated species. The dipole moment of HF@C 60 was estimated from the temperature-dependence of the dielectric constant at cryogenic temperatures and showed that the cage shields around 75% of the HF dipole.Molecular endofullerenes consist of fullerene cages encapsulating small molecules, which are free to rotate and translate inside the cage. 1 The dihydrogen and water endofullerenes H 2 @C 60 , H 2 O@C 60 , and their isotopologues, have been synthesized by the procedure known as 'molecular surgery', in which synthetic operations are used to open a hole in the fullerene allowing encapsulation of the guest, followed by a suturing technique to reform the pristine fullerene shell. [2][3][4] Recently the approach has been extended to C 70 and C 59 N. [5][6][7] The confined molecules display quantization of their coupled translational and rotational degrees of freedom, and exhibit phenomena such as nuclear spin isomerism and orthopara conversion. [8][9][10][11][12] Recently it was shown that nuclear spin conversion of the encapsulated water molecules in H 2 O@C 60 leads to a change in the dielectric constant of the material. 13 One system of great interest is HF@C 60 , in which each fullerene cage contains a single hydrogen fluoride (HF) molecule. This material offers the possibility to study the spectroscopic properties of nearisolated and freely rotating HF molecules under a wide range of conditions, free from the complications of dimerization and hydrogen bonding. Predictions of the properties of HF@C 60 have been made using classical, 14 semiempirical 15,16 and quantum chemistry techniques. [17][18][19][20] Furthermore it has been postulated that endofullerenes containing freely rotating electric dipoles could exhibit ferroelectricity, due to cooperative alignment of the interacting electric dipole moments. 21 2The first examples of open-cage endofullerenes encapsulating a hydrogen fluoride molecule have recently appeared, including HF@1. 22,23 Herein we report the successful suturing of HF@1 to give the closed-cage species HF@C 60 . We present NMR, infrared, and neutron scattering data on HF@C 60 which show that the translational and rotational motions of the HF molecule inside the cage are quantized. Interactions with the cage modify the rotational and vibrational constants of the encapsula...
Edited by Norma AllewellLiver receptor homolog 1 (NR5A2, LRH-1) is an orphan nuclear hormone receptor that regulates diverse biological processes, including metabolism, proliferation, and the resolution of endoplasmic reticulum stress. Although preclinical and cellular studies demonstrate that LRH-1 has great potential as a therapeutic target for metabolic diseases and cancer, development of LRH-1 modulators has been difficult. Recently, systematic modifications to one of the few known chemical scaffolds capable of activating LRH-1 failed to improve efficacy substantially. Moreover, mechanisms through which LRH-1 is activated by synthetic ligands are entirely unknown. Here, we use x-ray crystallography and other structural methods to explore conformational changes and receptor-ligand interactions associated with LRH-1 activation by a set of related agonists. Unlike phospholipid LRH-1 ligands, these agonists bind deep in the pocket and do not interact with residues near the mouth nor do they expand the pocket like phospholipids. Unexpectedly, two closely related agonists with similar efficacies (GSK8470 and RJW100) exhibit completely different binding modes. The dramatic repositioning is influenced by a differential ability to establish stable face-to-face --stacking with the LRH-1 residue His-390, as well as by a novel polar interaction mediated by the RJW100 hydroxyl group. The differing binding modes result in distinct mechanisms of action for the two agonists. Finally, we identify a network of conserved water molecules near the ligand-binding site that are important for activation by both agonists. This work reveals a previously unappreciated complexity associated with LRH-1 agonist development and offers insights into rational design strategies.Liver receptor homolog 1 (LRH-1; NR5A2) is a nuclear hormone receptor (NR) 3 that controls expression of a diverse set of genes important both in normal physiology and disease. In addition to a vital role during development (1, 2), LRH-1 regulates many genes related to metabolism, proliferation, and cell survival. In the liver, LRH-1 regulates bile acid biosynthesis (3) and reverse cholesterol transport (4, 5), affecting hepatic and circulating cholesterol levels. Glucose metabolism is also regulated by LRH-1 at several points, including GLUT-4-mediated transport (6) and glucose phosphorylation, the latter of which is essential for proper postprandial glucose sensing, flux through glycolysis and glycogenesis pathways, and de novo lipogenesis (7). LRH-1 is a key mediator of the cell stress response through control of genes involved in the hepatic acute phase response (8) and in the cytoprotective resolution of endoplasmic reticulum stress (9). Additionally, LRH-1 can be aberrantly overexpressed in certain cancers and can promote tumor growth through estrogen receptor and -catenin signaling (10 -16).Considering the breadth and significance of these physiological effects, LRH-1 modulators are highly desired as potential therapeutic agents. Chemical modulators would al...
The crystal structure of LRH-1 ligand binding domain bound to our previously reported agonist 3-(E-oct-4-en-4-yl)-1-phenylamino-2-phenyl-cis-bicyclo[3.3.0]oct-2-ene 5 is described. Two new classes of agonists in which the bridgehead anilino group from our first series was replaced with an alkoxy or 1-ethenyl group were designed, synthesized, and tested for activity in a peptide recruitment assay. Both new classes gave very active compounds, particularly against SF-1. Structure-activity studies led to excellent dual-LRH-1/SF-1 agonists (e.g., RJW100) as well as compounds selective for LRH-1 (RJW101) and SF-1 (RJW102 and RJW103). The series based on 1-ethenyl substitution was acid stable, overcoming a significant drawback of our original bridgehead anilino-substituted series. Initial studies on the regulation of gene expression in human cell lines showed excellent, reproducible activity at endogenous target genes.
Despite the increasingly digital nature of society there are some areas of research that remain firmly rooted in the past; in this case the laboratory notebook, the last remaining paper component of an experiment. Countless electronic laboratory notebooks (ELNs) have been created in an attempt to digitise record keeping processes in the lab, but none of them have become a ‘key player’ in the ELN market, due to the many adoption barriers that have been identified in previous research and further explored in the user studies presented here. The main issues identified are the cost of the current available ELNs, their ease of use (or lack of it) and their accessibility issues across different devices and operating systems. Evidence suggests that whilst scientists willingly make use of generic notebooking software, spreadsheets and other general office and scientific tools to aid their work, current ELNs are lacking in the required functionality to meet the needs of the researchers. In this paper we present our extensive research and user study results to propose an ELN built upon a pre-existing cloud notebook platform that makes use of accessible popular scientific software and semantic web technologies to help overcome the identified barriers to adoption.Electronic supplementary materialThe online version of this article (doi:10.1186/s13321-017-0221-3) contains supplementary material, which is available to authorized users.
New high-yielding synthetic routes to the small-molecule endofullerenes H2O@C60, D2O@C60 and H2@C60 are described. The use of high temperatures and pressures for the endohedral molecule incorporation are avoided. A new partial closure step using PPh3, and final suturing using a novel Diels-Alder/retro-Diels-Alder sequence are amongst the advances reported.
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