Although the impacts of crop domestication on specialist pathogens are well known, less is known about the interaction of crop variation and generalist pathogens. To study how genetic variation within a crop affects plant resistance to generalist pathogens, we infected a collection of wild and domesticated tomato accessions with a genetically diverse population of the generalist pathogen Botrytis cinerea. We quantified variation in lesion size of 97 B. cinerea genotypes (isolates) on six domesticated tomato genotypes (Solanum lycopersicum) and six wild tomato genotypes (Solanum pimpinellifolium). Lesion size was significantly affected by large effects of the host and pathogen's genotype, with a much smaller contribution of domestication. This pathogen collection also enables genome-wide association mapping of B. cinerea. Genome-wide association mapping of the pathogen showed that virulence is highly polygenic and involves a diversity of mechanisms. Breeding against this pathogen would likely require the use of diverse isolates to capture all possible mechanisms. Critically, we identified a subset of B. cinerea genes where allelic variation was linked to altered virulence against wild versus domesticated tomato, as well as loci that could handle both groups. This generalist pathogen already has a large collection of allelic variation that must be considered when designing a breeding program.

ABSTRACT. Soybean is one of the main sources of foreign exchange credits for Brazil in the agricultural sector. There is increasing interest in growing this leguminous crop, especially in the southern region of Minas Gerais, due to its importance as an alternative for crop rotation with maize. In this respect, the study of the adaptability of new cultivars to the region is indispensable so as to obtain high yields. Thus, the aim of this study was to evaluate the performance of 38 soybean cultivars for growing in the summer season in the municipality of Lavras, MG, Brazil, in the 2010/2011 and 2011/2012 crop years. The experiments were conducted in a randomized block design with 3 replications and the treatments consisted of 38 cultivars. At the time of harvest, the following assessments were made: grain yield (kg/ha), height of the lowest pod (cm), plant height (cm), and lodging. The data were subjected to individual and combined analysis of variance. The phenotypic mean values were clustered, adopting the Scott and Knott test. For simultaneous selection of multiple traits, the sum of rank index of Mulamba and Mock was adopted. The cultivar TMG 801 RR had the best yield performance; the cultivars Monsoy 8001, MGBR-46 8996 I.O. Soares et al. ©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 14 (3): 8995-9003 (2015) (Conquista), and BRSMG 68 (Vencedora) also stood out. Considering simultaneous selection for grain yield, plant height, height of the lowest pod, and lodging, the cultivar TMG 801 RR is recommended for growing in the summer season in the southern region of Minas Gerais.

Botrytis cinerea is a fungal pathogen that causes necrotic disease on more than a thousand known hosts widely spread across the plant kingdom. How B. cinerea interacts with such extensive host diversity remains largely unknown. To address this question, we generated an infectivity matrix of 98 strains of B. cinerea on 90 genotypes representing eight host plants. This experimental infectivity matrix revealed that the disease outcome is largely explained by variations in either the host resistance or pathogen virulence. However, the specific interactions between host and pathogen account for 16% of the disease outcome. Furthermore, the disease outcomes cluster among genotypes of a species but are independent of the relatedness between hosts. When analyzing the host specificity and virulence of B. cinerea, generalist strains are predominant. In this fungal necrotroph, specialization may happen by a loss in virulence on most hosts rather than an increase of virulence on a specific host. To uncover the genetic architecture of Botrytis host specificity and virulence, a genome-wide association study (GWAS) was performed and revealed up to 1492 genes of interest. The genetic architecture of these traits is widespread across B. cinerea genome. The complexity of the disease outcome might be explained by hundreds of functionally diverse genes putatively involved in adjusting the infection to diverse hosts.

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