To manage and conserve biodiversity, one must know what is being lost, where, and why, as well as which remedies are likely to be most effective. Metabarcoding technology can characterise the species compositions of mass samples of eukaryotes or of environmental DNA. Here, we validate metabarcoding by testing it against three high-quality standard data sets that were collected in Malaysia (tropical), China (subtropical) and the United Kingdom (temperate) and that comprised 55,813 arthropod and bird specimens identified to species level with the expenditure of 2,505 person-hours of taxonomic expertise. The metabarcode and standard data sets exhibit statistically correlated alpha-and beta-diversities, and the two data sets produce similar policy conclusions for two conservation applications: restoration ecology and systematic conservation planning. Compared with standard biodiversity data sets, metabarcoded samples are taxonomically more comprehensive, many times quicker to produce, less reliant on taxonomic expertise and auditable by third parties, which is essential for dispute resolution.

The global biodiversity crisis concerns not only unprecedented loss of species within communities, but also related consequences for ecosystem function. Community ecology focuses on patterns of species richness and community composition, whereas ecosystem ecology focuses on fluxes of energy and materials. Food webs provide a quantitative framework to combine these approaches and unify the study of biodiversity and ecosystem function. We summarise the progression of foodweb ecology and the challenges in using the food-web approach. We identify five areas of research where these advances can continue, and be applied to global challenges. Finally, we describe what data are needed in the next generation of food-web studies to reconcile the structure and function of biodiversity.Reconciling the study of biodiversity and ecosystem function We are experiencing two interrelated global ecological crises. One is in biodiversity, with unprecedented rates of species loss across all major ecosystems, combined with greatly accelerated biotic exchange between landmasses [1]. Consequently, spatial and temporal patterns of species occurrence are being fundamentally altered by extinction and invasion. The second crisis concerns the regulation of ecological processes and the ecosystem services they provide. Processes such as primary production and nutrient cycling have been severely altered by human activities [1].Our understanding of biodiversity comes largely from a sound theoretical and empirical basis provided by community ecology, including core concepts such as niche segregation [2] and Island Biogeography [3,4]. Early studies of individual species' habitat preferences and physiological tolerances have been complemented by studies of interspecific interactions from field surveys and experiments. Applications such as conservation management depend largely on mapping of community patterns and studies of habitat occupancy and preferences. More recently, habitat models have been applied, and the advent of simple and cheap molecular markers has allowed quantification of important community assembly (see Glossary) processes such as dispersal [5]. In community ecology the unit of study is the individual, population, or species, consistent with other sub-disciplines such as behavioural and population biology. Review GlossaryAssembly: the set of processes by which a food web is rebuilt after disturbance or the creation of new habitat. Bioenergetics: the flow and transformation of energy in and between living organisms and between living organisms and their environment. Cascade model: a food-web model which assumes hierarchical feeding along a single niche axis, with each species allocated a probability of feeding on taxa below it in the hierarchy. Community web: a food web intended to include all species and trophic links that occur within a defined ecological community. 'Species' in this sense might involve various degrees of aggregation or division of biological species. Compartmentalisation: the property by which one subset of sp...

Most eukaryotic organisms are arthropods. Yet, their diversity in rich terrestrial ecosystems is still unknown. Here we produce tangible estimates of the total species richness of arthropods in a tropical rainforest. Using a comprehensive range of structured protocols, we sampled the phylogenetic breadth of arthropod taxa from the soil to the forest canopy in the San Lorenzo forest, Panama. We collected 6144 arthropod species from 0.48 hectare and extrapolated total species richness to larger areas on the basis of competing models. The whole 6000-hectare forest reserve most likely sustains 25,000 arthropod species. Notably, just 1 hectare of rainforest yields >60% of the arthropod biodiversity held in the wider landscape. Models based on plant diversity fitted the accumulated species richness of both herbivore and nonherbivore taxa exceptionally well. This lends credence to global estimates of arthropod biodiversity developed from plant models.M ost eukaryote species are terrestrial arthropods (1), and most terrestrial arthropods occur in tropical rainforests (2). However, considerably greater sampling effort is required in tropical arthropod surveys to yield realistic estimates of global species richness (3-7). A basic hindrance to estimating global biodiversity lies in a lack of empirical data that establish local biodiversity, which can be scaled up to achieve a global estimate.Although many studies reported species richness for selected groups of well-studied insect taxa, no satisfactory estimate of total arthropod species richness exists for a single tropical rainforest location to date.The unstructured collection and small-scale survey of tropical arthropods cannot yield convincing estimates of total species richness at a specific forest (7-9). Most studies either target few arthropod orders or trophic guilds, or use a limited array of sampling methods, or ignore the diverse upper canopy regions of tropical forests (10-15). Moreover, sampling protocols have rarely been structured in such a way that, with increased sampling, incomplete data on local diversity (7) can be extrapolated to estimate total species richness across multiple spatial scales (16). Where such structured estimates are made, it is invariably for insect herbivores on their host plants (5). However, species accumulation rates may differ markedly for nonherbivore guilds, which include more than half of all described arthropod species (1, 17). As the degree of host specificity (effective specialization) of other guilds can be much lower than that of insect herbivores, or may be driven by different factors (18,19), global estimates based on herbivores alone are questionable. Consequently, extensive cross-taxon surveys with structured protocols at reference sites may be the only effective approach toward estimating total arthropod species richness in tropical forests (3).To provide a comprehensive estimate of total arthropod species richness in a tropical rainforest, we established a collaboration involving 102 researchers with expertise encom...

The forest canopy is the functional interface between 90% of Earth's terrestrial biomass and the atmosphere. Multidisciplinary research in the canopy has expanded concepts of global species richness, physiological processes, and the provision of ecosystem services. Trees respond in a species-specific manner to elevated carbon dioxide levels, while climate change threatens plant-animal interactions in the canopy and will likely alter the production of biogenic aerosols that affect cloud formation and atmospheric chemistry.