Graphene layers have been targeted in the last years as excellent host materials for sensing a remarkable variety of gases and molecules. Such sensing abilities can also benefit other important scientific fields such as medicine and biology. This has automatically led scientists to probe graphene as a potential platform for sequencing DNA strands. In this work, we use robust numerical tools to model the dynamic and electronic properties of molecular sensor devices composed of a graphene nanopore through which DNA molecules are driven by external electric fields. We performed molecular dynamic simulations to determine the relation between the intensity of the electric field and the translocation time spent by the DNA to pass through the pore. Our results reveal that one can have extra control on the DNA passage when four additional graphene layers are deposited on the top of the main graphene platform containing the pore in a 2 × 2 grid arrangement. In addition to the dynamic analysis, we carried electronic transport calculations on realistic pore structures with diameters reaching nanometer scales. The transmission obtained along the graphene sensor at the Fermi level is affected by the presence of the DNA. However, it is rather hard to distinguish the respective nucleobases. This scenario can be significantly altered when the transport is conducted away from the Fermi level of the graphene platform. Under an energy shift, we observed that the graphene pore manifests selectiveness toward DNA nucleobases.
The rates of interfacial charge transfer and recombination between the donor and acceptor layers play a key role in determining the performance of organic photovoltaic cells. The time scale and mechanism of these processes are expected to be impacted by the structure of the interface. In this paper we model the kinetics of those processes within the framework of a subphthalocyanine/fullerene donor/acceptor dimer model. Two likely configurations (on-top and hollow) in which the interfacial charge transfer and recombination may occur are studied. The corresponding rate constants are calculated within the fully quantum-mechanical framework of Fermi's golden rule. All the input parameters (excitation energies, electronic coupling coefficients, normal-mode frequencies and coordinates, and Huang−Rhys factors) are obtained from density functional theory calculations with density functionals designed to yield accurate results in the case of noncovalently bound systems and charge transfer states. Multiple π−π* and charge-transfer excited states are identified and assigned. The kinetics of photoinduced charge transfer is obtained by solving a master equation using Fermi's golden rule rate constants for the electronic transitions between the various excited states. Our results suggest that the hollow configuration may be superior to the on-top configuration and that maximizing its prevalence may improve the performance of subphthalocyanine/fullerene-based photovoltaic cells.
Charge transfer (CT) states formed at the donor/acceptor heterointerface are key for photocurrent generation in organic photovoltaics (OPV). Our calculations show that interfacial donor-to-donor CT states in the phthalocyanine-fullerene OPV system may be more stable than donor-to-acceptor CT states and that they may rapidly recombine, thereby constituting a potentially critical and thus far overlooked loss mechanism. Our results provide new insight into processes that may compete with charge separation, and suggest that the efficiency for charge separation may be improved by destabilizing donor-to-donor CT states or decoupling them from other states.
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