Summary: NAViGaTOR is a powerful graphing application for the 2D and 3D visualization of biological networks. NAViGaTOR includes a rich suite of visual mark-up tools for manual and automated annotation, fast and scalable layout algorithms and OpenGL hardware acceleration to facilitate the visualization of large graphs. Publication-quality images can be rendered through SVG graphics export. NAViGaTOR supports community-developed data formats (PSI-XML, BioPax and GML), is platform-independent and is extensible through a plug-in architecture.Availability: NAViGaTOR is freely available to the research community from http://ophid.utoronto.ca/navigator/. Installers and documentation are provided for 32- and 64-bit Windows, Mac, Linux and Unix.Contact: juris@ai.utoronto.caSupplementary information: Supplementary data are available at Bioinformatics online.

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Recently mud crab (Scylla olivacea) has emerged as a potential export commodity. Its farming is increasing rapidly in Bangladesh because of its lucrative price and high demand in international market. However, the farming or fattening of mud crab is totally dependent on capture of wild crablets. A huge quantity of mud crabs is being caught indiscriminately from nature and thus putting intense pressure on its wild stock, which is a major concern of conservation. Imposing ban at peak breeding season and setting a legal capture size are considered effective management tools for safe migration and spawning of berried females. There is contradictory information on breeding season of mud crab in Bangladesh. Thus, it is crucial to identify the peak breeding season of it and to formulate conservation policies to protect the berried crabs. Live crabs were collected year-round from the river adjacent to southwest part of Sundarbans. Although mud crab breeds throughout the year, March-April was identified as the peak breeding season of it. The second peak was observed in August-September. The highest abundance of crablets (1-2 months age) was recorded in May-June, and the lowest in January-February. Immature crablets were found all through the year that proves that mud crab is a continuous breeder. The highest amount of GSI value (11.6) was observed in February-March, which indicates that the breeding is very near. The size at first maturity (M 50 ) was estimated as 95.5 mm CW which lied at size class 91-100 mm (CW). The findings from the study will assist in fixing up the banning time and thus protecting the mother crabs; and will assist in formulating police to conserve and protect juvenile crabs in the sense that the minimum legal capture size of crabs will allow the adults to mate and spawn at least once before their capture.

The pH and salinity balance mechanisms of crayfish are controlled by a set of transport-related genes. We identified a set of the genes from the gill transcriptome from a freshwater crayfish Cherax quadricarinatus using the Illumina NGS-sequencing technology. We identified and characterized carbonic anhydrase (CA) genes and some other key genes involved in systematic acid-base balance and osmotic/ionic regulation. We also examined expression patterns of some of these genes across different sublethal pH levels [1]. A total of 72,382,710 paired-end Illumina reads were assembled into 36,128 contigs with an average length of 800 bp. About 37% of the contigs received significant BLAST hits and 22% were assigned gene ontology terms. These data will assist in further physiological-genomic studies in crayfish.

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