Regulated transcription controls the diversity, developmental pathways and spatial organization of the hundreds of cell types that make up a mammal. Using single-molecule cDNA sequencing, we mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tissues to produce a comprehensive overview of mammalian gene expression across the human body. We find that few genes are truly ‘housekeeping’, whereas many mammalian promoters are composite entities composed of several closely separated TSSs, with independent cell-type-specific expression profiles. TSSs specific to different cell types evolve at different rates, whereas promoters of broadly expressed genes are the most conserved. Promoter-based expression analysis reveals key transcription factors defining cell states and links them to binding-site motifs. The functions of identified novel transcripts can be predicted by coexpression and sample ontology enrichment analyses. The functional annotation of the mammalian genome 5 (FANTOM5) project provides comprehensive expression profiles and functional annotation of mammalian cell-type-specific transcriptomes with wide applications in biomedical research.
The aquaculture sector is significantly behind plant and farm animal production in applying selective breeding, in spite of the fact that it has been suggested that the world aquaculture production could be doubled in 13 years if breeding programmes were supplying stocks for the farmed species. It is estimated that as late as in 2010, only 8.2% of the world's total aquaculture production was based on material developed in selective breeding programmes. Reported estimates of genetic gain per generation for a key trait like growth rate average 13%, implying that the animal's potential for growth can be doubled in a time span of only six generations of selection, as demonstrated for major farmed species like Atlantic salmon and Nile tilapia. Likewise are reported genetic gains for improved disease resistance generally very high. This study offers an updated review of published estimates on genetic gains for a range of traits in aquaculture species. Results are highly encouraging and demonstrate a substantial potential for genetic improvement in aquatic productions, in particular for traits such as growth rate and resistance to diseases.
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