Identifying interactions between proteins is important to understand underlying biological processes. Extracting a protein-protein interaction (PPI) from the raw text is often very difficult. Previous supervised learning methods have used handcrafted features on human-annotated data sets. In this paper, we propose a novel tree recurrent neural network with structured attention architecture for doing PPI. Our architecture achieves state of the art results (precision, recall, and F1-score) on the AIMed and BioInfer benchmark data sets. Moreover, our models achieve a significant improvement over previous best models without any explicit feature extraction. Our experimental results show that traditional recurrent networks have inferior performance compared to tree recurrent networks for the supervised PPI problem.

In recent NLP research, a topic of interest is universal sentence encoding, sentence representations that can be used in any supervised task. At the word sequence level, fully attention-based models suffer from two problems: a quadratic increase in memory consumption with respect to the sentence length and an inability to capture and use syntactic information. Recursive neural nets can extract very good syntactic information by traversing a tree structure. To this end, we propose Tree Transformer, a model that captures phrase level syntax for constituency trees as well as word-level dependencies for dependency trees by doing recursive traversal only with attention. Evaluation of this model on four tasks gets noteworthy results compared to the standard transformer and LSTM-based models as well as tree-structured LSTMs. Ablation studies to find whether positional information is inherently encoded in the trees and which type of attention is suitable for doing the recursive traversal are provided.

In Natural Language Processing (NLP), we often need to extract information from tree topology. Sentence structure can be represented via a dependency tree or a constituency tree structure. For this reason, a variant of LSTMs, named Tree-LSTM, was proposed to work on tree topology. In this paper, we design a generalized attention framework for both dependency and constituency trees by encoding variants of decomposable attention inside a Tree-LSTM cell. We evaluated our models on a semantic relatedness task and achieved notable results compared to Tree-LSTM based methods with no attention as well as other neural and non-neural methods and good results compared to Tree-LSTM based methods with attention.

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Recognition of handwritten numerals has gained much interest in recent years due to its various application potentials. The progress of handwritten Bangla numeral is well behind Roman, Chinese and Arabic scripts although it is a major language in Indian subcontinent and is the first language of Bangladesh. Handwritten numeral classification is a high-dimensional complex task and existing methods use distinct feature extraction techniques and various classification tools in their recognition schemes. Recently, convolutional neural network (CNN) is found efficient for image classification with its distinct features. In this study, three different CNNs with same architecture are trained with different training sets and combined their decisions for Bangla handwritten numeral recognition.