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Summary Throughout the world there is a trend towards retaining crop residues rather than burning them. For this reason, changes in soil chemistry and aggregation in a Vertisol induced by 59 years of burning or green cane harvesting with or without annual fertilizer applications were investigated. Crop residues were either burnt prior to harvest with the harvest residues raked off (R1), burnt prior to harvest with the harvest residues left on the soil surface (R2), or left unburnt with all the trash left on the soil surface (R3). Concentrations of organic C in the surface 10 cm of soil increased with fertilizer applications and with increasing amounts of crop residue returned in the order R1 < R2 < R3. Fertilizer applications caused an accumulation of residual P in both inorganic (Pi) and organic (Po) forms. A sequential P fractionation showed that fertilizer P accumulated in both labile and recalcitrant Pi and Po forms, and trash retention caused an accumulation of recalcitrant Po. Concentrations of K decreased in the unfertilized R1 and R2 treatments because K reserves were depleted. By contrast, there was an increase in the concentrations of K in the fertilized R3 treatment. The soil became more acid on the fertilized and, to a lesser extent, trash retention plots. We attribute this to nitrification and subsequent nitrate leaching. Acidification resulted in a loss of exchangeable Ca and Mg, a decrease in ECEC, and an increase in the concentrations of total and monomeric Al in soil solution, in exchangeable Al3+ and in the buffering reserve of non‐exchangeable Al associated with organic matter. Aggregate stability was increased by increasing crop residues but decreased by fertilizer applications. The decrease was attributed to an increase in the proportion of exchangeable cations present in monovalent form due to applications of fertilizer K and leaching of Ca and Mg. We conclude that trash retention and annual fertilizer applications have substantial long‐term effects on both organic matter status and soil pH and therefore on other soil chemical and physical properties.

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