We investigate swimming and chemotactic behaviors of the polarly flagellated marine bacteria Vibrio alginolyticus in an aqueous medium. Our observations show that V. alginolyticus execute a cyclic, three-step (forward, reverse, and flick) swimming pattern that is distinctively different from the run-tumble pattern adopted by Escherichia coli. Specifically, the bacterium backtracks its forward swimming path when the motor reverses. However, upon resuming forward swimming, the flagellum flicks and a new swimming direction is selected at random. In a chemically homogeneous medium (no attractant or repellent), the consecutive forward t f and backward t b swimming times are uncorrelated. Interestingly, although t f and t b are not distributed in a Poissonian fashion, their difference Δt ¼ jt f − t b j is. Near a point source of attractant, on the other hand, t f and t b are found to be strongly correlated, and Δt obeys a bimodal distribution. These observations indicate that V. alginolyticus exploit the time-reversal symmetry of forward and backward swimming by using the time difference to regulate their chemotactic behavior. By adopting the three-step cycle, cells of V. alginolyticus are able to quickly respond to a chemical gradient as well as to localize near a point source of attractant.bacterial chemotaxis | bacterial swimming pattern E nteric bacteria, such as Escherichia coli, swim by rotating a set of flagella that forms a bundle when the flagellar motors turn in the counterclockwise (CCW) direction (1-3). The bundle falls apart when one or more motors turns in the clockwise (CW) direction, and the bacterium tumbles (4). A new swimming direction is selected upon resuming the CCW rotation of the flagellar motors. By modulating the CCW and CW intervals according to external chemical cues, the cells are able to migrate toward attractants or away from repellents (5, 6).Certain bacterial species possess a single polar flagellum with a bidirectional motor similar to E. coli. Being single polarly flagellated, low Reynolds number (Re) hydrodynamics dictates that, aside from random thermal motions, the bacterium can only backtrack its trajectory when the motor reverses. This raises an interesting question concerning how this type of cells performs chemotaxis. Studies of motility patterns of single polarly flagellated bacteria Pseudomonas citronellolis showed that the bacteria change the swimming direction by a brief reversal between two long runs. From the published trajectories (7), each reversal typically results in a small change in cell orientation, and thus several reversals appear to be necessary for a significant change in the swimming direction. Backtracking was also observed in a number of single flagellated marine bacteria such as Shewanella putrefaciens, Pseudoalteromonas haloplanktis, and Vibrio alginolyticus, which execute the so-called run-reverse steps when following attractants released from porous beads and from algae (8-10). A pioneering experiment in V. alginolyticus revealed that the timereversal s...

The fungal microbiota is an important component of the human gut microbiome and may be linked to gastrointestinal disease. In this study, the fungal microbiota of biopsy samples from adenomas and adjacent tissues was characterized by deep sequencing. Ascomycota, Glomeromycota and Basidiomycota were identified as the dominant phyla in both adenomas and adjacent tissues from all subjects. Among the 60 genera identified, the opportunist pathogens Phoma and Candida represented an average of 45% of the fungal microbiota. When analyzed at the operational taxonomic unit (OTU) level, however, a decreased diversity in adenomas was observed, and three OTUs differed significantly from the adjacent tissues. Principal Component Analysis (PCA) revealed that the core OTUs formed separate clusters for advanced and non-advanced adenomas for which the abundance of four OTUs differed significantly. Moreover, the size of adenomas and the disease stage were closely related to changes in the fungal microbiota in subjects with adenomas. This study characterized the fungal microbiota profile of subjects with adenomas and identified potential diagnostic biomarkers closely related to different stages of adenomas.

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Methamphetamine abuse is a major public health crisis. Because accumulating evidence supports the hypothesis that the gut microbiota plays an important role in central nervous system (CNS) function, and research on the roles of the microbiome in CNS disorders holds conceivable promise for developing novel therapeutic avenues for treating CNS disorders, we sought to determine whether administration of methamphetamine leads to alterations in the intestinal microbiota. In this study, the gut microbiota profiles of rats with methamphetamine-induced conditioned place preference (CPP) were analyzed through 16S rRNA gene sequencing. The fecal microbial diversity was slightly higher in the METH CPP group. The propionate-producing genus Phascolarctobacterium was attenuated in the METH CPP group, and the family Ruminococcaceae was elevated in the METH CPP group. Short chain fatty acid analysis revealed that the concentrations of propionate were decreased in the fecal matter of METH-administered rats. These findings provide direct evidence that administration of METH causes gut dysbiosis, enable a better understanding of the function of gut microbiota in the process of drug abuse, and provide a new paradigm for addiction treatment.

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