Molecular (dye) aggregates are a materials platform of interest in light harvesting, organic optoelectronics, and nanoscale computing, including quantum information science (QIS). Strong excitonic interactions between dyes are key to their use in QIS; critically, properties of the individual dyes govern the extent of these interactions. In this work, the electronic structure and excited-state dynamics of a series of indolenine-based squaraine dyes incorporating dimethylamino (electron donating) and/or nitro (electron withdrawing) substituents, so-called asymmetric dyes, were characterized. The dyes were covalently tethered to DNA Holliday junctions to suppress aggregation and permit characterization of their monomer photophysics. A combination of density functional theory and steady-state absorption spectroscopy shows that the difference static dipole moment (Δd) successively increases with the addition of these substituents while simultaneously maintaining a large transition dipole moment (μ). Steady-state fluorescence and time-resolved absorption and fluorescence spectroscopies uncover a significant nonradiative decay pathway in the asymmetrically substituted dyes that drastically reduces their excited-state lifetime (τ). This work indicates that Δd can indeed be increased by functionalizing dyes with electron donating and withdrawing substituents and that, in certain classes of dyes such as these asymmetric squaraines, strategies may be needed to ensure long τ, e.g., by rigidifying the π-conjugated network.

Time-resolved fluorescence measurements were used to quantify partitioning of three different 7-aminocoumarin derivatives into DPPC vesicle bilayers as a function of temperature. The coumarin derivatives were structurally equivalent except for the degree of substitution at the 7-amine position. Calculated log P (octanol: water partitioning) coefficients, a common indicator that correlates with bioconcentration, predict that the primary amine (coumarin 151 or C151) would experience a ∼40-fold partition enrichment in polar organic environments (log P C151 = 1.6) while the tertiary amine’s (coumarin 152 or C152) concentration should be >500 times enhanced (log P C152 = 2.7). Both values predict that partitioning into lipid membranes is energetically favorable. Time-resolved emission spectra from C151 in solutions containing DPPC vesicles showed that within detection limits, the solute remained in the aqueous buffer regardless of temperature and vesicle bilayer phase. C152 displayed a sharp uptake into DPPC bilayers as the temperature approached DPPC’s gel–liquid crystalline transition temperature, consistent with previously reported results ([J. Phys. Chem. B201712140614070]). The secondary amine, synthesized specifically for these studies and dubbed C151.5 with a measured log P value of 1.9, partitioned into the bilayer’s polar head group with no pronounced temperature dependence. These experiments illustrate the limitations of using a gross descriptor of preferential solvation to describe solute partitioning into complex, heterogeneous systems having nanometer-scale dimensions. From a broader perspective, results presented in this work illustrate the need for more chemically informed tools for predicting a solute tendency for where and how much it will bioconcentrate within a biological membrane.

Molecular aggregates are of interest to a broad range of fields including light harvesting, organic optoelectronics, and nanoscale computing. In molecular aggregates, nonradiative decay pathways may emerge that were not present in the constituent molecules. Such nonradiative decay pathways may include singlet fission, excimer relaxation, and symmetry-breaking charge transfer. Singlet fission, sometimes referred to as excitation multiplication, is of great interest to the fields of energy conversion and quantum information. For example, endothermic singlet fission, which avoids energy loss, has been observed in covalently bound, linear perylene trimers and tetramers. In this work, the electronic structure and excited-state dynamics of dimers of a perylene derivative templated using DNA were investigated. Specifically, DNA Holliday junctions were used to template the aggregation of two perylene molecules covalently linked to a modified uracil nucleobase through an ethynyl group. The perylenes were templated in the form of monomer, transverse dimer, and adjacent dimer configurations. The electronic structure of the perylene monomers and dimers were characterized via steady-state absorption and fluorescence spectroscopy. Initial insights into their excited-state dynamics were gleaned from relative fluorescence intensity measurements, which indicated that a new nonradiative decay pathway emerges in the dimers. Femtosecond visible transient absorption spectroscopy was subsequently used to elucidate the excited-state dynamics. A new excited-state absorption feature grows in on the tens of picosecond timescale in the dimers, which is attributed to the formation of perylene anions and cations resulting from symmetry-breaking charge transfer. Given the close proximity required for symmetry-breaking charge transfer, the results shed promising light on the prospect of singlet fission in DNA-templated molecular aggregates.