Many recent studies have demonstrated that several known and unknown viruses infect many horticultural plants. However, the elucidation of a viral population and the understanding of the genetic complexity of viral genomes in a single plant are rarely reported. Here, we conducted metatranscriptome analyses using six different peach trees representing six individual peach cultivars. We identified six viruses including five viruses in the family Betaflexiviridae and a novel virus belonging to the family Tymoviridae as well as two viroids. The number of identified viruses and viroids in each transcriptome ranged from one to six. We obtained 18 complete or nearly complete genomes for six viruses and two viroids using transcriptome data. Furthermore, we analyzed single nucleotide variations for individual viral genomes. In addition, we analyzed the amount of viral RNA and copy number for identified viruses and viroids. Some viruses or viroids were commonly present in different cultivars; however, the list of infected viruses and viroids in each cultivar was different. Taken together, our study reveals the viral population in a single peach tree and a comprehensive overview for the diversities of viral communities in different peach cultivars.

Viruses are ubiquitous and present in a wide range of settings, from living organisms to various environments. Although viruses are regarded as important pathogens in higher plants, viral populations in specific host plants have not yet been fully examined. This study revealed viral populations in grape berries obtained from a cultivar from a single vineyard using currently available grapevine transcriptomes. Eight viruses and two viroids were identified using 11 grapevine libraries. Virus-associated sequences in each transcriptome ranged from 0.2% (seed) to 8.8% (skin). The amount of viral RNAs and virus copy numbers was quantified, thus revealing the dominant virus or viroid in each individual library. In addition, five viral genomes were successfully assembled de novo using transcriptome data. Phylogenetic analyses revealed that the viruses and viroids might have originated from Europe, along with the host. Single nucleotide variation studies revealed the quasispecies of RNA viruses. Taken together, this study defines complex viral populations in three different grape tissues from a single vineyard.

Abstract. Since the start of the industrial revolution, human activities have caused a rapid increase in atmospheric carbon dioxide (CO2) concentrations, which have, in turn, had an impact on climate leading to global warming and ocean acidification. Various approaches have been proposed to reduce atmospheric CO2. The Martin (or iron) hypothesis suggests that ocean iron fertilization (OIF) could be an effective method for stimulating oceanic carbon sequestration through the biological pump in iron-limited, high-nutrient, low-chlorophyll (HNLC) regions. To test the Martin hypothesis, 13 artificial OIF (aOIF) experiments have been performed since 1990 in HNLC regions. These aOIF field experiments have demonstrated that primary production (PP) can be significantly enhanced by the artificial addition of iron. However, except in the Southern Ocean (SO) European Iron Fertilization Experiment (EIFEX), no significant change in the effectiveness of aOIF (i.e., the amount of iron-induced carbon export flux below the winter mixed layer depth, MLD) has been detected. These results, including possible side effects, have been debated amongst those who support and oppose aOIF experimentation, and many questions concerning the effectiveness of scientific aOIF, environmental side effects, and international aOIF law frameworks remain. In the context of increasing global and political concerns associated with climate change, it is valuable to examine the validity and usefulness of the aOIF experiments. Furthermore, it is logical to carry out such experiments because they allow one to study how plankton-based ecosystems work by providing insight into mechanisms operating in real time and under in situ conditions. To maximize the effectiveness of aOIF experiments under international aOIF regulations in the future, we therefore suggest a design that incorporates several components. (1) Experiments conducted in the center of an eddy structure when grazing pressure is low and silicate levels are high (e.g., in the SO south of the polar front during early summer). (2) Shipboard observations extending over a minimum of ∼40 days, with multiple iron injections (at least two or three iron infusions of ∼2000 kg with an interval of ∼10–15 days to fertilize a patch of 300 km2 and obtain a ∼2 nM concentration). (3) Tracing of the iron-fertilized patch using both physical (e.g., a drifting buoy) and biogeochemical (e.g., sulfur hexafluoride, photosynthetic quantum efficiency, and partial pressure of CO2) tracers. (4) Employment of neutrally buoyant sediment traps (NBST) and application of the water-column-derived thorium-234 (234Th) method at two depths (i.e., just below the in situ MLD and at the winter MLD), with autonomous profilers equipped with an underwater video profiler (UVP) and a transmissometer. (5) Monitoring of side effects on marine/ocean ecosystems, including production of climate-relevant gases (e.g., nitrous oxide, N2O; dimethyl sulfide, DMS; and halogenated volatile organic compounds, HVOCs), decline in oxygen inventory, and development of toxic algae blooms, with optical-sensor-equipped autonomous moored profilers and/or autonomous benthic vehicles. Lastly, we introduce the scientific aOIF experimental design guidelines for a future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES).

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