Microplankton organisms are an important link in the transfer of matter and energy between the benthic-pelagic microbial food web and higher trophic levels in estuaries. Although tropical estuaries are among the most productive aquatic systems globally, information on the spatial and seasonal dynamics of microplankton in such systems is scarce. In order to identify which variables control microplankton abundance and community structure a number of environmental variables were measured along the tropical Gulf of Nicoya (Costa Rica) during the rainy and dry seasons (2011)(2012). The Tempisque River was a major source of nutrients and turbidity and thus imposing a clear gradient along the estuary. Chlorophyll a (chl a) concentration was highest in the middle of the estuary (2.7-20 mg m -3 ), where turbidity decreased. The microplankton comprised mainly diatoms (88%) and dinoflagellates (8%).Multivariate analysis revealed five different microplankton assemblages associated with a seasonal and riverine-marine gradient, and supporting an ecotone model at the estuary head that shifts to an ecocline model for the rest of the estuary. Our results suggest that primary producers in the estuary were mainly limited by light rather than nutrients.

Size structure of phytoplankton determines to a large degree the trophic interactions in oceanic and coastal waters and eventually the destiny of its biomass. Although, tropical estuarine systems are some of the most productive systems worldwide compared to temperate systems, little is known about phytoplankton biomass size fractions, their contribution to net metabolism, or the ecological factors driving phytoplankton size distribution in tropical estuaries. Hence, we measured the size-fractionated biomass and net metabolism of the plankton community along a salinity and nutrient gradient in the Gulf of Nicoya estuary (Costa Rica), during the dry season. Respiration (23.6 mmol O 2 m 23 h 21 ) was highest at the estuary head, whereas maximum net primary production (23.1 mmol O 2 m 23 h 21 ) was observed in the middle of the estuary, coinciding with the chlorophyll a maximum (15.9 mg m 23 ). Thus, only the middle section of the estuary was net autotrophic (2.9 g C m 22 d 21 ), with the rest of the estuary being net heterotrophic. Regression analysis identified light availability, and not nutrients, as the principal factor limiting primary production in the estuary due to increased turbidity. The changes in net metabolism along the estuary were also reflected in the phytoplankton's size structure. Although micro-and picophytoplankton were the most productive fractions overall, in the middle section of the estuary nanophytoplankton dominated primary production, chlorophyll, and autotrophic biomass.

Shelf seas represent only 10% of the ocean area, but support up to 30% of all oceanic primary production. There are few measurements of shelf-sea biological production at high spatial and temporal resolution in such heterogeneous and physically dynamic systems. Here, we use dissolved oxygen-to-argon (O2/Ar) ratios and oxygen triple isotopes (16O, 17O, 18O) to estimate net and gross biological production in the Celtic Sea during spring 2015. O2/Ar ratios were measured continuously using a shipboard membrane inlet mass spectrometer (MIMS). Additional discrete water samples from CTD hydrocasts were used to measure O2/Ar depth profiles and the δ(17O) and δ(18O) values of dissolved O2. These high-resolution data were combined with wind-speed based gas exchange parameterisations to calculate biologically driven air-sea oxygen fluxes. After correction for disequilibrium terms and diapycnal diffusion, these fluxes yielded estimates of net community (N(O2/Ar)) and gross O2 production (G(17O)). N(O2/Ar) was spatially heterogeneous and showed predominantly autotrophic conditions, with an average of (33±41) mmol m-2 d-1. G(17O) showed high variability between 0 and 424 mmol m-2 d-1. The ratio of N(O2/Ar) to G(17O), ƒ(O2), was (0.18±0.03) corresponding to 0.34±0.06 in carbon equivalents. We also observed rapid temporal changes in N(O2/Ar), e.g. an increase of 80 mmol m-2 d-1 in less than 6 hours during the spring bloom, highlighting the importance of high-resolution biological production measurements. Such measurements will help reconcile the differences between satellite and in situ productivity observations, and improve our understanding of the biological carbon pump

The reduction of 2-para (iodophenyl)-3(nitrophenyl)-5(phenyl) tetrazolium chloride (INT) is increasingly being used as an indirect method to measure plankton respiration. Its greater sensitivity and shorter incubation time compared to the standard method of measuring the decrease in dissolved oxygen concentration, allows the determination of total and size-fractionated plankton respiration with higher precision and temporal resolution. However, there are still concerns as to the method’s applicability due to the toxicity of INT and the potential differential effect of plankton cell wall composition on the diffusion of INT into the cell, and therefore on the rate of INT reduction. Working with cultures of 5 marine plankton (Thalassiosira pseudonana CCMP1080/5, Emiliania huxleyi RCC1217, Pleurochrysis carterae PLY-406, Scrippsiella sp. RCC1720 and Oxyrrhis marina CCMP1133/5) which have different cell wall compositions (silica frustule, presence/absence of calcite and cellulose plates), we demonstrate that INT does not have a toxic effect on oxygen consumption at short incubation times. There was no difference in the oxygen consumption of a culture to which INT had been added and that of a replicate culture without INT, for periods of time ranging from 1 to 7 hours. For four of the cultures (T. pseudonana CCMP1080/5, P. carterae PLY-406, E. huxleyi RCC1217, and O. marina CCMP1133/5) the log of the rates of dissolved oxygen consumption were linearly related to the log of the rates of INT reduction, and there was no significant difference between the regression lines for each culture (ANCOVA test, F = 1.696, df = 3, p = 0.18). Thus, INT reduction is not affected by the structure of the plankton cell wall and a single INT reduction to oxygen consumption conversion equation is appropriate for this range of eukaryotic plankton. These results further support the use of the INT technique as a valid proxy for marine plankton respiration.

Shelf seas represent only 10% of the World’s Ocean by area but support up to 30% of its primary production. There are few measurements of biological production at high spatial and temporal resolution in these physically and biologically dynamic systems. Here, we use dissolved oxygen to-argon (O2/Ar) ratios and oxygen triple isotopes in O2 (16O, 17O, 18O) to estimate net community production, N(O2/Ar), and gross O2 production, G(17O), in summer and autumn 2014 and spring and summer 2015 in the Celtic Sea, as part of the UK Shelf-Sea Biogeochemistry Programme. Surface O2/Ar concentration ratios were measured continuously using a shipboard membrane inlet mass spectrometer. Additional depth profiles of O2/Ar concentration ratios, δ(17O) and δ(18O) were measured in discrete water samples from hydrocasts. The data were combined with wind-speed based gas exchange parameterisations to calculate biological air-sea oxygen fluxes. These fluxes were corrected for diapycnal diffusion, entrainment, production below the mixed layer, and changes over time to derive N(O2/Ar) and G(17O). The Celtic Sea showed the highest G(17O) in summer 2014 (825 mmol m–2 d–1) and lowest during autumn 2014 (153 mmol m–2 d–1). N(O2/Ar) was highest in spring 2015 (43 mmol m–2 d–1), followed by summer 2014 (42 mmol m–2 d–1), with a minimum in autumn 2014 (–24 mmol m–2 d–1). Dividing the survey region into three hydrographically distinct areas (Celtic Deep, Central Celtic Sea and Shelf Edge), we found that Celtic Deep and Shelf Edge had higher N(O2/Ar) in summer (71 and 63 mmol m–2 d–1, respectively) than in spring (49 and 22 mmol m–2 d–1). This study shows regional differences in the metabolic balance within the same season, as well as higher net community production in summer than in spring in some areas and years. The seasonal patterns in biological production rates and the export efficiency (f-ratio) identified the importance of biology for supporting the Celtic Sea’s ability to act as a net CO2 sink. Our measurements thus help improve our understanding of the biological carbon pump in temperate shelf seas.