Overexploitation is a significant threat to biodiversity, with live capture of millions of animals annually. An improved understanding of live capture of primates is needed, especially for Madagascar's threatened lemurs. Our objectives were to provide the first quantitative estimates of the prevalence, spatial extent, correlates and timing of lemur ownership, procurement methods, within-country movements, and numbers and duration of ownership. Using semi-structured interviews of 1,093 households and 61 transporters, across 17 study sites, we found that lemur ownership was widespread and affected a variety of taxa. We estimate that 28,253 lemurs have been affected since 2010. Most lemurs were caught by owners and kept for either short (≤ 1 week) or long (≥ 3 years) periods. The live capture of lemurs in Madagascar is not highly organized but may threaten several Endangered and Critically Endangered species.