Monitoring marine resource exploitation is a key activity in fisheries science and biodiversity conservation. Since research surveys are time consuming and costly, fishery‐dependent data (i.e., derived directly from fishing vessels) are increasingly credited with a key role in expanding the reach of ocean monitoring. Fishing vessels may be seen as widely ranging data‐collecting platforms, which could act as a fleet of sentinels for monitoring marine life, in particular exploited stocks. Here, we investigate the possibility of assessing catch composition of single hauls carried out by trawlers by applying DNA metabarcoding to the dense water draining from fishing nets just after the end of hauling operations (hereafter “slush”). We assess the performance of this approach in portraying β‐diversity and examining the quantitative relationship between species abundances in the catch and DNA amount in the slush (read counts generated by amplicon sequencing). We demonstrate that the assemblages identified using DNA in the slush satisfactorily mirror those returned by visual inspection of net content (about 71% of species and 86% of families of fish) and detect a strong relationship between read counts and species abundances in the catch. We therefore argue that this approach could be upscaled to serve as a powerful source of information on the structure of demersal assemblages and the impact of fisheries.
The presence of plastic waste in the marine environment has driven the scientific community to make significant efforts to study and mitigate its possible effects. One of the critical aspects is to determine if and how an increase in ingestion events may occur as a result of the accumulation of plastic waste on the seabed. In this study, G. melastomus is examined for its ability to indirectly provide information on the amount of macroplastics accumulating on the seafloor. Plastic ingestion is explored by describing the feeding habits of the species, which have the potential to provide very useful information regarding biological or ecological issues. The diet of G. melastomus mainly consisted of cephalopods, bathypelagic fishes, and decapod crustaceans, increasing in diversity during growth. The generalist-opportunistic feeding behaviour of this species leads to the incidental ingestion of plastic particles (N = 47, with a mean (± SD) of 1.47 ± 0.28 per specimen) which can be indirectly associated to the presence of macroplastics on the seafloor. Indeed, our results indicate a significant relationship between the amount of macroplastics present on the seabed and the frequency of ingestion of plastic particles by blackmouth catshark. We propose G. melastomus as an excellent candidate for developing a valid monitoring strategy for the presence of plastics on the seabed, as requested by the EU Marine Strategy Framework Directive.
All is fish that comes to the net: metabarcoding for rapid fisheries catch 1 assessment 2 3 Running head: Metabarcoding for fisheries catch assessment 4 5
Conservation and management of chondrichthyans are becoming increasingly important, as many species are particularly vulnerable to fishing activities, primarily as bycatch, which leads to incomplete catch reporting, potentially hiding the impact on these organisms. Here, we aimed at implementing an eDNA metabarcoding approach to reconstruct shark and ray bycatch composition from 24 hauls of a bottom trawl fishing vessel in the central Mediterranean. eDNA samples were collected through the passive filtration of seawater by simple gauze rolls encapsulated in a probe (the “metaprobe”), which already showed great efficiency in detecting marine species from trace DNA in the environment. To improve molecular taxonomic detection, we enhanced the 12S target marker reference library by generating sequences for 14 Mediterranean chondrichthyans previously unrepresented in public repositories. DNA metabarcoding data correctly identifies almost all bycaught species and detected five additional species not present in the net, highlighting the potential of this method to detect rare species. Chondrichthyan diversity showed significant association with some key environmental variables (depth and distance from the coast) and the fishing effort, which are known to influence demersal communities. As DNA metabarcoding progressively positions itself as a staple tool for biodiversity monitoring, we expect that its melding with opportunistic, fishery-dependent surveys could reveal additional distribution features of threatened and elusive megafauna.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.