Objective: To compare performance of logistic regression (LR) with machine learning (ML) for clinical prediction modeling. Study design and setting: We conducted a Medline literature search (1/2016 to 8/2017), and extracted comparisons between LR and ML models for binary outcomes. Results: We included 71 out of 927 studies. The median sample size was 1250 (range 72-3,994,872), with 19 predictors considered (range 5-563) and 8 events per predictor (range 0.3-6,697). The most common ML methods were classification trees (30 studies), random forests (28), artificial neural networks (26), and support vector machines (24). Sixty-four (90%) studies used the area under the receiver operating characteristic curve (AUC) to assess discrimination. Calibration was not addressed in 56 (79%) studies. We identified 282 comparisons between a LR and ML model (AUC range, 0.52-0.99). For 145 comparisons at low risk of bias, the difference in logit(AUC) between LR and ML was 0.00 (95% confidence interval,-0.18 to 0.18). For 137 comparisons at high risk of bias, logit(AUC) was 0.34 (0.20 to 0.47) higher for ML. Conclusions: We found no evidence of superior performance of ML over LR for clinical prediction modeling, but improvements in methodology and reporting are needed for studies that compare modeling algorithms.
Decision curve analysis can identify risk models that can help us make better clinical decisions. We illustrate appropriate reporting and interpretation of decision curve analysis.
This is a continuous paper on limitations of commonly used metrics in image analysis. The current version discusses segmentation metrics only, while future versions will also include metrics for classification and detection tasks. For missing references, use cases, other comments or questions, please contact
This multicenter interventional trial involving 2625 prospective cases of pregnancy of unknown location (PUL) has shown that a two-step protocol incorporating the M6 model triaged effectively the majority of women with a PUL as being at low risk of an ectopic pregnancy (EP), minimizing the follow-up required for these patients after just two visits. There were few misclassified EPs and none of these women came to significant clinical harm or suffered a serious adverse clinical event.
What are the clinical implications of this work?The two-step protocol, incorporating the M6 model, is an effective and clinically safe way of rationalizing the management of women with a PUL.
The field of automatic biomedical image analysis crucially depends on robust and meaningful performance metrics for algorithm validation. Current metric usage, however, is often ill-informed and does not reflect the underlying domain interest. Here, we present a comprehensive framework that guides researchers towards choosing performance metrics in a problem-aware manner. Specifically, we focus on biomedical image analysis problems that can be interpreted as a classification task at image, object or pixel level. The framework first compiles domain interest-, target structure-, data set-and algorithm output-related properties of a given problem into a problem fingerprint, while also mapping it to the appropriate problem category, namely image-level classification, semantic segmentation, instance segmentation, or object detection. It then guides users through the process of selecting and applying a set of appropriate validation metrics while making them aware of potential pitfalls related to individual choices. In this paper, we describe the current status of the Metrics Reloaded recommendation framework, with the goal of obtaining constructive feedback from the image analysis community. The current version has been developed within an international consortium of more than 60 image analysis experts and will be made openly available as a user-friendly toolkit after community-driven optimization.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.