Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros Highlights d Complete genome and mitogenome analysis of the extinct woolly rhinoceros d Demographic analysis suggests stable population size until close to extinction d No increased inbreeding or reduced genomic diversity coinciding with human arrival d Woolly rhinoceros had genetic adaptations to arctic climate

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Guinea pigs (Cavia spp.) have a long association with humans. From as early as 10,000 years ago they were a wild food source. Later, domesticated Cavia porcellus were dispersed well beyond their native range through pre-Columbian exchange networks and, more recently, widely across the globe. Here we present 46 complete mitogenomes of archaeological guinea pigs from sites in Peru, Bolivia, Colombia, the Caribbean, Belgium and the United States to elucidate their evolutionary history, origins and paths of dispersal. our results indicate an independent centre of domestication of Cavia in the eastern colombian Highlands. We identify a peruvian origin for the initial introduction of domesticated guinea pigs (Cavia porcellus) beyond South America into the caribbean. We also demonstrate that peru was the probable source of the earliest known guinea pigs transported, as part of the exotic pet trade, to both Europe and the southeastern United States. Finally, we identify a modern reintroduction of guinea pigs to Puerto Rico, where local inhabitants use them for food. This research demonstrates that the natural and cultural history of guinea pigs is more complex than previously known and has implications for other studies regarding regional to global-scale studies of mammal domestication, translocation, and distribution. The use of ancient DNA (aDNA) in studies of animal domestication and subsequent translocation has radically improved our ability to identify spatially, temporally, and culturally variable processes of domestication and the diversity of social networks behind domestic species distribution (e.g. 1,2). Increasingly, aDNA studies are revising previous assumptions of geographically conscripted animal domestication and dispersal events to reveal multiple centers, timings, and processes of domestication of the world's most prominent domestic animals (e.g. pigs, chickens, cattle, dogs 3-6). Because domestic animals are exemplar proxies for investigating past human migration and interaction, understanding long-term, diachronic patterns of when and where species domestication and