Accurate studies of the pigment composition and isolation in pure cultures of Chlorobiaceae from samples of eight Spanish lakes show that there are two main coexisting groups of green and brown Chlorobium spp. represented respectively by Chlorobium limicola and Chlorobium phaeobacteroides. Laboratory experiments with pure and mixed cultures of the isolated strains show that light quality plays a selective role on the species composition among Chlorobiaceae. This selection depends on the pigment composition which determines the in vivo absorption spectrum of the cells as well as on their ability to adjust the intracellular concentration of light-harvesting pigments to the spectral distribution and energy of light. Correlation analysis performed with field data resulted in significant, but low, correlation coefficients. Nevertheless, they were consistent with laboratory data showing that brown Chlorobiaceae were dominant in deep layers in meromictic lakes, whereas green Chlorobiaceae dominated in layers nearer the surface or underneath plates of Chromatiaceae. The combination of laboratory and field observations stress the role of biological light filtering in determining the species composition among Chlorobiaceae in lakes.

dFaecalibacterium prausnitzii depletion in intestinal diseases has been extensively reported, but little is known about intraspecies variability. This work aims to determine if subjects with gastrointestinal disease host mucosa-associated F. prausnitzii populations different from those hosted by healthy individuals. A new species-specific PCR-denaturing gradient gel electrophoresis (PCR-DGGE) method targeting the 16S rRNA gene was developed to fingerprint F. prausnitzii populations in biopsy specimens from 31 healthy control (H) subjects and 36 Crohn's disease (CD), 23 ulcerative colitis (UC), 6 irritable bowel syndrome (IBS), and 22 colorectal cancer (CRC) patients. The richness of F. prausnitzii subtypes was lower in inflammatory bowel disease (IBD) patients than in H subjects. The most prevalent operational taxonomic units (OTUs) consisted of four phylotypes (OTUs with a 99% 16S rRNA gene sequence similarity [OTU99]), which were shared by all groups of patients. Their distribution and the presence of some disease-specific F. prausnitzii phylotypes allowed us to differentiate the populations in IBD and CRC patients from that in H subjects. At the level of a minimum similarity of 97% (OTU97), two phylogroups accounted for 98% of the sequences. Phylogroup I was found in 87% of H subjects but in under 50% of IBD patients (P ‫؍‬ 0.003). In contrast, phylogroup II was detected in >75% of IBD patients and in only 52% of H subjects (P ‫؍‬ 0.005). This study reveals that even though the main members of the F. prausnitzii population are present in both H subjects and individuals with gut diseases, richness is reduced in the latter and an altered phylotype distribution exists between diseases. This approach may serve as a basis for addressing the suitability of F. prausnitzii phylotypes to be quantified as a putative biomarker of disease and depicting the importance of the loss of these subtypes in disease pathogenesis. Metagenomic studies have shown that the human gut microbiota is constituted by a relatively limited number of dominating bacterial phyla. While in healthy adults Bacteroidetes and Firmicutes are the most abundant phyla, Proteobacteria, Verrucomicrobia, Actinobacteria, and Fusobacteria are relatively scarce (1-3). The firmicute Faecalibacterium prausnitzii (Ruminococcaceae) is one of the three most abundant species, representing approximately 6 to 8% of the gut microbial community in healthy subjects, although it can reach up to 20% in some individuals (1,(4)(5)(6)(7)(8)(9)(10)(11). In contrast, depletion of F. prausnitzii has been reported to occur in several pathological disorders (for a review, see reference 12 and references therein), such as Crohn's disease (CD) (12-19), ulcerative colitis (UC) (11,14,15,17,(20)(21)(22)(23)(24)(25)(26), irritable bowel syndrome (IBS) of alternating type (27), colorectal cancer (CRC) (28, 29), and diabetes (30-32).Many studies have shown the potential role of F. prausnitzii in promoting gut health through the secretion of anti-inflammatory compounds, such as butyrate ...

The effect of light quality on the selection of natural populations of Green Sulfur Bacteria (Chlorobiaceae) is considered to be a classic factor in the determination of their ecological niches. From the comparison among phototrophic bacterial populations of lakes, it is shown that brown and green pigmented groups of Chlorobiaceae have a differential distribution depending on depth. Statistical analyses prove that green species, which dominate at shallow oxic/anoxic boundaries, are correlated to light spectra enriched in long wavelengths, while brown ones are found when light spectra are enriched in the central region of the spectrum, as in deeper lake layers. Physiological experiments have been made withChlorobium limicola andC. phaeobacteroides cultures placed under different light quality conditions, in order to verify these hypotheses made on a field data basis. Results show that red and white light has more positive effects on the green bacterium than on the brown. Blue and green light illuminations have opposite consequences. Therefore, the effect of shallow depths and Chromatiaceae shading-which also increases the proportion of long wavelengths in light spectra-benefits the bacteriochlorophyll-based strategies of green species. On the other hand, the carotenoid-based strategies of brown ones are favored by the light climates usually dominant at greater depths. Thus, brown species are considered to be singular adaptations of Chlorobiaceae to depth, where bacteriochlorophyll light-harvesting is strongly limited by light quality.

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The relative content of the four main bacteriochlorophyll (BChl) e homologs of several populations of brown‐colored photosynthetic sulfur bacteria grown in different waterbodies have been measured by high performance liquid chromatography and statistically compared by principal component analysis. All the studied populations possessed representative pigment patterns enriched in highly alkylated bacteriochlorophyll e homologs, with average contents of 0.02±0.01%, 24.92±1.01%, 35.2±0.70%, and 39.9±0.71% for bacteriochlorophyll e1, e2, e3, and e4, respectively. These values clearly differ from those obtained for the same species growing under optimal conditions in laboratory batch cultures (4.99±1.11%, 50.34±1.73%, 28.99±0.63%, and 15.6±1.10% for bacteriochlorophyll e1, e2, e3, and e4, respectively). Multivariate statistical analyses grouped samples into two main clusters, both related to the developmental state of the population. Within these clusters, samples were arranged in several groups according to the physiological pigment response of bacterial populations to light limitation. Although bacteriochlorophyll homolog distribution cannot be considered a real taxonomic character, the data presented demonstrate that it can be useful in field studies since it reflects both the physiological status of the cells and the light regime under which the population has been growing.